NPY2R (neuropeptide Y receptor Y2) - Rat Genome Database

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Gene: NPY2R (neuropeptide Y receptor Y2) Sus scrofa
Analyze
Symbol: NPY2R
Name: neuropeptide Y receptor Y2
RGD ID: 14092701
Description: ENCODES a protein that exhibits neuropeptide Y receptor activity (ortholog); peptide YY receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); behavioral fear response (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); atherosclerosis (ortholog); childhood absence epilepsy (ortholog); FOUND IN cilium (ortholog); non-motile cilium (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: neuropeptide Y receptor type 2; neuropeptide Y Y2 receptor; neuropeptide Y2 receptor; NPY-Y2 receptor; NPY2-R; Y2 receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,039,616 - 74,047,817 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,039,959 - 74,048,398 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,331,707 - 78,340,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:9802394   PMID:11287083   PMID:22301074  


Genomics

Comparative Map Data
NPY2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,039,616 - 74,047,817 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,039,959 - 74,048,398 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,331,707 - 78,340,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPY2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384155,173,723 - 155,217,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4155,208,636 - 155,217,078 (+)EnsemblGRCh38hg38GRCh38
GRCh374156,094,875 - 156,138,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364156,349,232 - 156,357,678 (+)NCBINCBI36Build 36hg18NCBI36
Build 344156,487,385 - 156,495,832NCBI
Celera4153,460,186 - 153,468,632 (+)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4151,868,438 - 151,876,885 (+)NCBIHuRef
CHM1_14156,107,896 - 156,116,343 (+)NCBICHM1_1
T2T-CHM13v2.04158,505,608 - 158,548,978 (+)NCBIT2T-CHM13v2.0
Npy2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,445,688 - 82,455,404 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,445,690 - 82,455,391 (-)EnsemblGRCm39 Ensembl
GRCm38382,538,383 - 82,548,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl382,538,383 - 82,548,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37382,342,305 - 82,352,007 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36382,624,310 - 82,634,013 (-)NCBIMGSCv36mm8
Celera382,557,426 - 82,567,083 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.49NCBI
Npy2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,200,027 - 170,210,286 (-)NCBIGRCr8
mRatBN7.22167,901,999 - 167,912,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2167,903,879 - 167,905,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2175,099,298 - 175,100,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,120,230 - 173,121,376 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02167,713,107 - 167,714,253 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,528,949 - 181,538,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,530,832 - 181,531,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02200,942,882 - 200,952,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42150,554,962 - 150,556,108 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12174,209,622 - 174,210,769 (-)NCBI
Celera2161,929,373 - 161,930,519 (-)NCBICelera
Cytogenetic Map2q34NCBI
Npy2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547111,796,278 - 11,804,114 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547111,796,278 - 11,804,114 (-)NCBIChiLan1.0ChiLan1.0
NPY2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23153,087,172 - 153,132,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14153,442,534 - 153,487,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04147,542,551 - 147,586,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14159,360,854 - 159,404,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4159,401,080 - 159,402,231 (+)Ensemblpanpan1.1panPan2
NPY2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,790,136 - 52,797,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,794,671 - 52,795,818 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1553,131,265 - 53,141,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01553,475,002 - 53,484,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1553,481,383 - 53,484,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,727,621 - 52,737,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,836,294 - 52,846,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01553,149,800 - 53,159,345 (+)NCBIUU_Cfam_GSD_1.0
Npy2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530137,606,621 - 37,615,131 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,932,870 - 1,938,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,932,526 - 1,939,560 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPY2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,696,081 - 101,773,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,770,551 - 101,771,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603781,413,529 - 81,421,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npy2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248483,048,413 - 3,054,495 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248483,049,009 - 3,054,548 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NPY2R
215 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 1 1 6 3
Below cutoff 3 1 2 2 10 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000009850   ⟹   ENSSSCP00000009597
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl874,039,616 - 74,047,817 (-)Ensembl
RefSeq Acc Id: NM_214150   ⟹   NP_999315
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1874,040,885 - 74,042,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005666792   ⟹   XP_005666849
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1874,039,959 - 74,048,398 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005666849   ⟸   XM_005666792
- Peptide Label: isoform X1
- UniProtKB: F1RYR8 (UniProtKB/TrEMBL),   A0A4X1SUG7 (UniProtKB/TrEMBL),   A0A8D1F3D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999315   ⟸   NM_214150
- UniProtKB: Q9TSI1 (UniProtKB/Swiss-Prot),   O02836 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000009597   ⟸   ENSSSCT00000009850

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044351 UniProtKB/TrEMBL
  ENSSSCG00015040926 UniProtKB/TrEMBL
  ENSSSCG00025049990 UniProtKB/TrEMBL
  ENSSSCG00030041298 UniProtKB/TrEMBL
  ENSSSCG00035022939 UniProtKB/TrEMBL
  ENSSSCG00040054715 UniProtKB/TrEMBL
  ENSSSCG00045039348 UniProtKB/TrEMBL
  ENSSSCG00050002809 UniProtKB/TrEMBL
  ENSSSCG00055018858 UniProtKB/TrEMBL
  ENSSSCG00060016644 UniProtKB/TrEMBL
  ENSSSCG00065057014 UniProtKB/TrEMBL
  ENSSSCG00070003878 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009850 ENTREZGENE
  ENSSSCT00000009850.4 UniProtKB/TrEMBL
  ENSSSCT00005071305.1 UniProtKB/TrEMBL
  ENSSSCT00015054543.1 UniProtKB/TrEMBL
  ENSSSCT00025068208.1 UniProtKB/TrEMBL
  ENSSSCT00030057355.1 UniProtKB/TrEMBL
  ENSSSCT00035030009.1 UniProtKB/TrEMBL
  ENSSSCT00040074079.1 UniProtKB/TrEMBL
  ENSSSCT00045068493.1 UniProtKB/TrEMBL
  ENSSSCT00050003583.1 UniProtKB/TrEMBL
  ENSSSCT00055036909.1 UniProtKB/TrEMBL
  ENSSSCT00060022212.1 UniProtKB/TrEMBL
  ENSSSCT00065078051.1 UniProtKB/TrEMBL
  ENSSSCT00070007257.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPY2_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPY_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397291 UniProtKB/Swiss-Prot
NCBI Gene NPY2R ENTREZGENE
PANTHER NEUROPEPTIDE Y RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEUROPEPTIDE Y RECEPTOR TYPE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRPEPTIDEY2R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRPEPTIDEYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1SUG7 ENTREZGENE
  A0A8D1F3D0 ENTREZGENE, UniProtKB/TrEMBL
  F1RYR8 ENTREZGENE, UniProtKB/TrEMBL
  NPY2R_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q9TSI1 ENTREZGENE
UniProt Secondary A0A4X1SUG7 UniProtKB/TrEMBL
  Q9TSI1 UniProtKB/Swiss-Prot
VGNC ID VGNC:109473 ENTREZGENE