VPS51 (VPS51 subunit of GARP complex) - Rat Genome Database

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Gene: VPS51 (VPS51 subunit of GARP complex) Sus scrofa
Analyze
Symbol: VPS51
Name: VPS51 subunit of GARP complex
RGD ID: 14092684
Description: INVOLVED IN lysosomal transport (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); glycogen storage disease V (ortholog); FOUND IN EARP complex (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein fat-free homolog; vacuolar protein sorting-associated protein 51 homolog; VPS51, GARP complex subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,081,608 - 7,098,641 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,081,607 - 7,094,898 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,213,645 - 6,226,865 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
VPS51
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,081,608 - 7,098,641 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,081,607 - 7,094,898 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,213,645 - 6,226,865 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,096,214 - 65,111,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,089,324 - 65,111,862 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,863,686 - 64,879,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,620,259 - 64,635,756 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,620,258 - 64,635,756NCBI
Celera1162,189,983 - 62,205,480 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,190,221 - 61,205,968 (+)NCBIHuRef
CHM1_11164,747,287 - 64,763,009 (+)NCBICHM1_1
T2T-CHM13v2.01165,089,493 - 65,105,141 (+)NCBIT2T-CHM13v2.0
Vps51
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,117,872 - 6,127,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,117,872 - 6,127,261 (-)EnsemblGRCm39 Ensembl
GRCm38196,067,842 - 6,077,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,067,842 - 6,077,231 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,067,842 - 6,077,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,067,842 - 6,077,231 (-)NCBIMGSCv36mm8
Celera195,940,294 - 5,949,667 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Vps51
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,789,721 - 212,799,708 (-)NCBIGRCr8
mRatBN7.21203,360,434 - 203,370,422 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,360,440 - 203,370,430 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1221,430,648 - 221,440,467 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,365,957 - 228,376,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,705,273 - 208,712,115 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,894,134 - 200,904,582 (-)NCBICelera
Cytogenetic Map1q43NCBI
Vps51
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,091,682 - 20,102,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,091,682 - 20,102,371 (-)NCBIChiLan1.0ChiLan1.0
VPS51
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,322,332 - 66,344,553 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,365,294 - 67,387,514 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,452,483 - 60,474,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,791,474 - 63,812,461 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,791,519 - 63,812,340 (+)Ensemblpanpan1.1panPan2
VPS51
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,083,896 - 52,106,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,083,884 - 52,106,046 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,691,963 - 50,714,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,125,971 - 53,147,607 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,125,973 - 53,147,543 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,221,337 - 52,242,953 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,795,320 - 51,816,809 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,589,801 - 52,611,844 (-)NCBIUU_Cfam_GSD_1.0
Vps51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,815,890 - 7,832,426 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,258,239 - 4,274,831 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,258,239 - 4,274,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS51
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,117,080 - 9,142,070 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,116,723 - 9,142,031 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,498,127 - 106,523,933 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps51
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,291,728 - 21,307,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,291,728 - 21,307,550 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS51
475 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014216   ⟹   ENSSSCP00000013830
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,081,608 - 7,098,641 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053557   ⟹   ENSSSCP00000043083
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,081,607 - 7,094,890 (-)Ensembl
RefSeq Acc Id: XM_003122565   ⟹   XP_003122613
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,081,607 - 7,094,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005660714   ⟹   XP_005660771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,081,607 - 7,094,547 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003122613   ⟸   XM_003122565
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UYP1 (UniProtKB/TrEMBL),   A0A8D1MFL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660771   ⟸   XM_005660714
- Peptide Label: isoform X2
- UniProtKB: A0A8D1HXJ8 (UniProtKB/TrEMBL),   A0A8D0VUK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043083   ⟸   ENSSSCT00000053557
RefSeq Acc Id: ENSSSCP00000013830   ⟸   ENSSSCT00000014216
Protein Domains
Exocyst complex component EXOC2/Sec5 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013005 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076911 UniProtKB/TrEMBL
  ENSSSCG00025072501 UniProtKB/TrEMBL
  ENSSSCG00030016925 UniProtKB/TrEMBL
  ENSSSCG00035076621 UniProtKB/TrEMBL
  ENSSSCG00040054957 UniProtKB/TrEMBL
  ENSSSCG00045018116 UniProtKB/TrEMBL
  ENSSSCG00050038690 UniProtKB/TrEMBL
  ENSSSCG00055024592 UniProtKB/TrEMBL
  ENSSSCG00060054582 UniProtKB/TrEMBL
  ENSSSCG00065030724 UniProtKB/TrEMBL
  ENSSSCG00070021224 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014216 ENTREZGENE
  ENSSSCT00000014216.5 UniProtKB/TrEMBL
  ENSSSCT00015104470.1 UniProtKB/TrEMBL
  ENSSSCT00015104527.1 UniProtKB/TrEMBL
  ENSSSCT00015104554.1 UniProtKB/TrEMBL
  ENSSSCT00015104588.1 UniProtKB/TrEMBL
  ENSSSCT00025099701.1 UniProtKB/TrEMBL
  ENSSSCT00025099810.1 UniProtKB/TrEMBL
  ENSSSCT00030023437.1 UniProtKB/TrEMBL
  ENSSSCT00030023444.1 UniProtKB/TrEMBL
  ENSSSCT00030023450.1 UniProtKB/TrEMBL
  ENSSSCT00030023455.1 UniProtKB/TrEMBL
  ENSSSCT00035104668.1 UniProtKB/TrEMBL
  ENSSSCT00035104718.1 UniProtKB/TrEMBL
  ENSSSCT00035104746.1 UniProtKB/TrEMBL
  ENSSSCT00035104802.1 UniProtKB/TrEMBL
  ENSSSCT00040074460.1 UniProtKB/TrEMBL
  ENSSSCT00040074585.1 UniProtKB/TrEMBL
  ENSSSCT00045031028.1 UniProtKB/TrEMBL
  ENSSSCT00045031121.1 UniProtKB/TrEMBL
  ENSSSCT00045031209.1 UniProtKB/TrEMBL
  ENSSSCT00045031306.1 UniProtKB/TrEMBL
  ENSSSCT00050052177.1 UniProtKB/TrEMBL
  ENSSSCT00050052182.1 UniProtKB/TrEMBL
  ENSSSCT00055048769.1 UniProtKB/TrEMBL
  ENSSSCT00055048859.1 UniProtKB/TrEMBL
  ENSSSCT00055048940.1 UniProtKB/TrEMBL
  ENSSSCT00055049014.1 UniProtKB/TrEMBL
  ENSSSCT00060074382.1 UniProtKB/TrEMBL
  ENSSSCT00060074405.1 UniProtKB/TrEMBL
  ENSSSCT00060074412.1 UniProtKB/TrEMBL
  ENSSSCT00060074426.1 UniProtKB/TrEMBL
  ENSSSCT00065041522.1 UniProtKB/TrEMBL
  ENSSSCT00070042185.1 UniProtKB/TrEMBL
InterPro Cullin_repeat-like_dom_sf UniProtKB/TrEMBL
  EXOC2/Sec5_N_dom UniProtKB/TrEMBL
  Vps51 UniProtKB/TrEMBL
KEGG Report ssc:100518951 UniProtKB/TrEMBL
NCBI Gene VPS51 ENTREZGENE
PANTHER PTHR15954 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG UniProtKB/TrEMBL
Pfam Sec5 UniProtKB/TrEMBL
  VPS51_Exo84_N UniProtKB/TrEMBL
Superfamily-SCOP SSF74788 UniProtKB/TrEMBL
UniProt A0A4X1UYP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VUK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F3X8_PIG UniProtKB/TrEMBL
  A0A8D1HT73_PIG UniProtKB/TrEMBL
  A0A8D1HXJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MFL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RN82_PIG UniProtKB/TrEMBL
  F1RQT6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94859 ENTREZGENE