NAIF1 (nuclear apoptosis inducing factor 1) - Rat Genome Database

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Gene: NAIF1 (nuclear apoptosis inducing factor 1) Sus scrofa
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Symbol: NAIF1
Name: nuclear apoptosis inducing factor 1
RGD ID: 14092218
Description: INVOLVED IN negative regulation of cell growth (ortholog); regulation of mitochondrial membrane permeability involved in apoptotic process (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear apoptosis-inducing factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,522,131 - 268,531,528 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,447,429 - 302,452,754 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)
plasma membrane  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NAIF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,522,131 - 268,531,528 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,447,429 - 302,452,754 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAIF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,061,233 - 128,067,320 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,061,233 - 128,068,206 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,823,512 - 130,829,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,863,341 - 129,869,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,903,073 - 127,908,945NCBI
Celera9101,475,536 - 101,481,621 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,438,643 - 100,444,828 (-)NCBIHuRef
CHM1_19130,975,740 - 130,981,830 (-)NCBICHM1_1
T2T-CHM13v2.09140,269,203 - 140,275,296 (-)NCBIT2T-CHM13v2.0
Naif1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,340,469 - 32,346,969 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,340,469 - 32,346,965 (+)EnsemblGRCm39 Ensembl
GRCm38232,450,457 - 32,455,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,450,457 - 32,456,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,305,977 - 32,310,996 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,272,466 - 32,277,485 (+)NCBIMGSCv36mm8
Celera232,156,117 - 32,161,136 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Naif1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,138,982 - 36,145,414 (+)NCBIGRCr8
mRatBN7.2315,741,239 - 15,747,672 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,742,919 - 15,747,669 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,810,077 - 18,816,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,395,082 - 27,401,497 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,645,935 - 25,652,356 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,476,330 - 11,482,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,476,883 - 11,481,744 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,825,190 - 16,831,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,485,211 - 10,491,509 (+)NCBICelera
Cytogenetic Map3p11NCBI
Naif1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419656,275 - 661,928 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419656,311 - 661,928 (+)NCBIChiLan1.0ChiLan1.0
NAIF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,285,494 - 11,291,356 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,287,877 - 11,293,898 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,181,980 - 99,188,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,853,002 - 127,859,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,853,002 - 127,859,049 (-)Ensemblpanpan1.1panPan2
NAIF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,395,318 - 55,400,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,395,710 - 55,398,412 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,589,476 - 54,594,652 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,317,409 - 56,322,585 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,317,869 - 56,322,583 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,077,151 - 55,082,327 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,391,883 - 55,397,059 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,483,370 - 55,488,546 (+)NCBIUU_Cfam_GSD_1.0
Naif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,887,044 - 195,892,579 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,655,449 - 15,660,314 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,655,571 - 15,660,300 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAIF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,059,162 - 10,066,004 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,059,935 - 10,066,094 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,158,931 - 6,165,077 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naif1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,551,081 - 7,557,680 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,550,943 - 7,556,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NAIF1
378 total Variants

Expression


Sequence


RefSeq Acc Id: XM_003480616   ⟹   XP_003480664
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11268,522,131 - 268,531,528 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003480664   ⟸   XM_003480616
- UniProtKB: A0A4X1U5M3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Myb/SANT-like DNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005029478 UniProtKB/TrEMBL
  ENSSSCG00015058667 UniProtKB/TrEMBL
  ENSSSCG00030072638 UniProtKB/TrEMBL
  ENSSSCG00035021078 UniProtKB/TrEMBL
  ENSSSCG00040070651 UniProtKB/TrEMBL
  ENSSSCG00045008159 UniProtKB/TrEMBL
  ENSSSCG00050012337 UniProtKB/TrEMBL
  ENSSSCG00055016995 UniProtKB/TrEMBL
  ENSSSCG00060006765 UniProtKB/TrEMBL
  ENSSSCG00065075304 UniProtKB/TrEMBL
  ENSSSCG00070014325 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005046818.1 UniProtKB/TrEMBL
  ENSSSCT00015078274.1 UniProtKB/TrEMBL
  ENSSSCT00030101706.1 UniProtKB/TrEMBL
  ENSSSCT00035027456.1 UniProtKB/TrEMBL
  ENSSSCT00040096986.1 UniProtKB/TrEMBL
  ENSSSCT00045013703.1 UniProtKB/TrEMBL
  ENSSSCT00050016635.1 UniProtKB/TrEMBL
  ENSSSCT00055033472.1 UniProtKB/TrEMBL
  ENSSSCT00060008622.1 UniProtKB/TrEMBL
  ENSSSCT00065103911.1 UniProtKB/TrEMBL
  ENSSSCT00070028078.1 UniProtKB/TrEMBL
InterPro Myb_DNA-bind_5 UniProtKB/TrEMBL
KEGG Report ssc:100521710 UniProtKB/TrEMBL
NCBI Gene NAIF1 ENTREZGENE
PANTHER NUCLEAR APOPTOSIS-INDUCING FACTOR 1 UniProtKB/TrEMBL
  PTHR23098 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_5 UniProtKB/TrEMBL
UniProt A0A4X1U5M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PD34_PIG UniProtKB/TrEMBL
  A0A8D1FUC5_PIG UniProtKB/TrEMBL