FAM210A (family with sequence similarity 210 member A) - Rat Genome Database

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Gene: FAM210A (family with sequence similarity 210 member A) Sus scrofa
Analyze
Symbol: FAM210A
Name: family with sequence similarity 210 member A
RGD ID: 14091728
Description: ASSOCIATED WITH Bone Fractures (ortholog); chromosome 18p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM210A; uncharacterized protein C18orf19 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl696,384,758 - 96,393,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1696,363,440 - 96,394,001 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,687,023 - 89,700,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)
mitochondrion  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
FAM210A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl696,384,758 - 96,393,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1696,363,440 - 96,394,001 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,687,023 - 89,700,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM210A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381813,663,347 - 13,726,558 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1813,663,347 - 13,726,663 (-)EnsemblGRCh38hg38GRCh38
GRCh371813,663,346 - 13,726,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361813,653,346 - 13,716,591 (-)NCBINCBI36Build 36hg18NCBI36
Build 341813,655,744 - 13,716,559NCBI
Celera1813,545,661 - 13,607,519 (-)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef1813,617,571 - 13,679,746 (-)NCBIHuRef
CHM1_11813,662,718 - 13,725,760 (-)NCBICHM1_1
T2T-CHM13v2.01813,826,182 - 13,888,908 (-)NCBIT2T-CHM13v2.0
Fam210a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391868,393,248 - 68,433,404 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1868,393,258 - 68,433,404 (-)EnsemblGRCm39 Ensembl
GRCm381868,260,175 - 68,300,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1868,260,187 - 68,300,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv371868,419,838 - 68,459,987 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361868,392,047 - 68,425,589 (-)NCBIMGSCv36mm8
Celera1869,568,543 - 69,608,322 (-)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1840.98NCBI
Fam210a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81864,116,274 - 64,155,971 (-)NCBIGRCr8
mRatBN7.21861,846,447 - 61,886,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1861,852,907 - 61,886,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,921,522 - 63,961,161 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01864,626,345 - 64,666,029 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01862,471,148 - 62,510,669 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01864,045,023 - 64,084,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1864,045,432 - 64,084,556 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01863,201,100 - 63,235,128 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41864,711,764 - 64,752,197 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,784,964 - 64,817,272 (+)NCBI
Celera1859,949,235 - 59,988,884 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Fam210a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955402343,371 - 367,252 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955402344,191 - 367,851 (+)NCBIChiLan1.0ChiLan1.0
FAM210A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21724,319,052 - 24,377,858 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11810,011,774 - 10,070,179 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018598,267 - 657,131 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1182,767,335 - 2,827,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl182,767,335 - 2,827,533 (+)Ensemblpanpan1.1panPan2
FAM210A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,499,572 - 24,529,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,518,239 - 24,527,820 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,480,676 - 25,510,115 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,396,748 - 24,426,406 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,396,741 - 24,426,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,451,579 - 24,481,217 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,338,262 - 24,368,139 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,611,132 - 24,641,046 (+)NCBIUU_Cfam_GSD_1.0
Fam210a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049443,867,221 - 3,898,286 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366263,095,944 - 3,106,331 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366263,096,220 - 3,106,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM210A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11872,144,944 - 72,203,303 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1872,141,561 - 72,203,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,211,531 - 47,270,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam210a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477020,290,086 - 20,300,310 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477020,290,086 - 20,312,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM210A
359 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000027780   ⟹   ENSSSCP00000080711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl696,384,758 - 96,393,999 (+)Ensembl
RefSeq Acc Id: XM_021096018   ⟹   XP_020951677
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1696,363,440 - 96,394,001 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020951677   ⟸   XM_021096018
- UniProtKB: A0A8D0U2D0 (UniProtKB/TrEMBL),   A0A8W4FMJ1 (UniProtKB/TrEMBL),   A0A8D0YE89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080711   ⟸   ENSSSCT00000027780
Protein Domains
DUF1279


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058331 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002460 UniProtKB/TrEMBL
  ENSSSCG00015038066 UniProtKB/TrEMBL
  ENSSSCG00030073985 UniProtKB/TrEMBL
  ENSSSCG00035077033 UniProtKB/TrEMBL
  ENSSSCG00040071351 UniProtKB/TrEMBL
  ENSSSCG00045030093 UniProtKB/TrEMBL
  ENSSSCG00050046993 UniProtKB/TrEMBL
  ENSSSCG00055008112 UniProtKB/TrEMBL
  ENSSSCG00060063767 UniProtKB/TrEMBL
  ENSSSCG00065014606 UniProtKB/TrEMBL
  ENSSSCG00070026666 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027780 ENTREZGENE
  ENSSSCT00000027780.4 UniProtKB/TrEMBL
  ENSSSCT00005003704.1 UniProtKB/TrEMBL
  ENSSSCT00005003712.1 UniProtKB/TrEMBL
  ENSSSCT00005003723.1 UniProtKB/TrEMBL
  ENSSSCT00005003736.1 UniProtKB/TrEMBL
  ENSSSCT00015050666.1 UniProtKB/TrEMBL
  ENSSSCT00030103703.1 UniProtKB/TrEMBL
  ENSSSCT00035104906.1 UniProtKB/TrEMBL
  ENSSSCT00040098039.1 UniProtKB/TrEMBL
  ENSSSCT00045051305.1 UniProtKB/TrEMBL
  ENSSSCT00050063974.1 UniProtKB/TrEMBL
  ENSSSCT00055015823.1 UniProtKB/TrEMBL
  ENSSSCT00060086983.1 UniProtKB/TrEMBL
  ENSSSCT00060086993.1 UniProtKB/TrEMBL
  ENSSSCT00065019455.1 UniProtKB/TrEMBL
  ENSSSCT00070053459.1 UniProtKB/TrEMBL
  ENSSSCT00070053462.1 UniProtKB/TrEMBL
  ENSSSCT00070053482.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1430 UniProtKB/TrEMBL
InterPro DUF1279 UniProtKB/TrEMBL
  FAM210A/B-like UniProtKB/TrEMBL
NCBI Gene FAM210A ENTREZGENE
PANTHER PROTEIN FAM210A UniProtKB/TrEMBL
  PTHR21377 UniProtKB/TrEMBL
Pfam DUF1279 UniProtKB/TrEMBL
UniProt A0A4X1VP19_PIG UniProtKB/TrEMBL
  A0A4X1VTW6_PIG UniProtKB/TrEMBL
  A0A8D0U2D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YE89 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FMJ1 ENTREZGENE, UniProtKB/TrEMBL