PALLD (palladin, cytoskeletal associated protein) - Rat Genome Database

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Gene: PALLD (palladin, cytoskeletal associated protein) Sus scrofa
Analyze
Symbol: PALLD
Name: palladin, cytoskeletal associated protein
RGD ID: 14091630
Description: ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to hypoxia (ortholog); epithelial cell morphogenesis (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); excitatory synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: palladin; palladin pseudogene
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1420,678,452 - 21,020,125 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,965,285 - 22,200,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PALLD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1420,678,452 - 21,020,125 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,965,285 - 22,200,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PALLD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384168,497,052 - 168,928,441 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4168,497,052 - 168,928,457 (+)EnsemblGRCh38hg38GRCh38
GRCh374169,418,203 - 169,849,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364169,654,792 - 170,086,183 (+)NCBINCBI36Build 36hg18NCBI36
Celera4166,748,020 - 167,180,983 (+)NCBICelera
Cytogenetic Map4q32.3NCBI
HuRef4165,170,970 - 165,603,126 (+)NCBIHuRef
CHM1_14169,394,774 - 169,826,047 (+)NCBICHM1_1
T2T-CHM13v2.04171,856,045 - 172,287,862 (+)NCBIT2T-CHM13v2.0
Palld
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39861,964,465 - 62,355,741 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl861,964,467 - 62,355,724 (-)EnsemblGRCm39 Ensembl
GRCm38861,511,431 - 61,902,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,511,433 - 61,902,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37863,993,818 - 64,381,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36864,403,398 - 64,794,832 (-)NCBIMGSCv36mm8
Celera864,078,203 - 64,475,199 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map831.23NCBI
Palld
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81633,238,943 - 33,632,236 (+)NCBIGRCr8
mRatBN7.21628,228,006 - 28,621,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1627,981,354 - 28,621,337 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01631,865,712 - 31,948,168 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1631,734,944 - 31,946,242 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01631,401,114 - 31,786,201 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41631,854,459 - 31,933,792NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1628,535,132 - 28,616,857 (+)NCBICelera
Cytogenetic Map16p12NCBI
PALLD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23166,273,693 - 166,697,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14166,787,075 - 167,052,445 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04160,718,475 - 161,140,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14173,120,958 - 173,216,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PALLD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12519,147,310 - 19,568,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2519,146,898 - 19,553,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2519,178,454 - 19,599,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02519,285,396 - 19,694,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2519,285,412 - 19,694,079 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12519,146,258 - 19,574,549 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02519,153,183 - 19,562,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02519,215,651 - 19,637,403 (+)NCBIUU_Cfam_GSD_1.0
Palld
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494320,372,101 - 20,739,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936516802,484 - 1,151,801 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936516786,358 - 1,151,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PALLD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17114,758,017 - 115,173,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603794,642,207 - 95,083,209 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Palld
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624769150,738 - 559,045 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624769150,800 - 560,163 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PALLD
15210 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 2 2 1
Low 8 3 3 3 22 2 2 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000010658   ⟹   ENSSSCP00000010381
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1420,678,463 - 21,020,125 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000022985   ⟹   ENSSSCP00000023436
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1420,678,462 - 21,020,125 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053826   ⟹   ENSSSCP00000058082
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1420,678,452 - 21,020,112 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083889   ⟹   ENSSSCP00000073453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1420,678,462 - 21,020,125 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087439   ⟹   ENSSSCP00000059708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1420,678,462 - 21,020,125 (-)Ensembl
RefSeq Acc Id: XM_021073309   ⟹   XP_020928968
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073310   ⟹   XP_020928969
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073311   ⟹   XP_020928970
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073312   ⟹   XP_020928971
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 20,908,104 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073313   ⟹   XP_020928972
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 20,908,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073314   ⟹   XP_020928973
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11420,678,456 - 20,756,751 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020928969   ⟸   XM_021073310
- Peptide Label: isoform X2
- UniProtKB: F1RIW3 (UniProtKB/TrEMBL),   A0A4X1V1J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928968   ⟸   XM_021073309
- Peptide Label: isoform X1
- UniProtKB: A0A287BPI5 (UniProtKB/TrEMBL),   A0A8D1HNR2 (UniProtKB/TrEMBL),   A0A4X1UXE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928970   ⟸   XM_021073311
- Peptide Label: isoform X3
- UniProtKB: A0A8D1HPU6 (UniProtKB/TrEMBL),   I3LH91 (UniProtKB/TrEMBL),   A0A4X1V1J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928971   ⟸   XM_021073312
- Peptide Label: isoform X4
- UniProtKB: A0A8D0XIS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928972   ⟸   XM_021073313
- Peptide Label: isoform X4
- UniProtKB: A0A8D0XIS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928973   ⟸   XM_021073314
- Peptide Label: isoform X5
- UniProtKB: A0A8D1ZSJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010381   ⟸   ENSSSCT00000010658
RefSeq Acc Id: ENSSSCP00000073453   ⟸   ENSSSCT00000083889
RefSeq Acc Id: ENSSSCP00000023436   ⟸   ENSSSCT00000022985
RefSeq Acc Id: ENSSSCP00000058082   ⟸   ENSSSCT00000053826
RefSeq Acc Id: ENSSSCP00000059708   ⟸   ENSSSCT00000087439
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029331 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015033693 UniProtKB/TrEMBL
  ENSSSCG00025021662 UniProtKB/TrEMBL
  ENSSSCG00030057484 UniProtKB/TrEMBL
  ENSSSCG00035055600 UniProtKB/TrEMBL
  ENSSSCG00040052138 UniProtKB/TrEMBL
  ENSSSCG00045017871 UniProtKB/TrEMBL
  ENSSSCG00060072757 UniProtKB/TrEMBL
  ENSSSCG00065064194 UniProtKB/TrEMBL
  ENSSSCG00070020830 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010658 ENTREZGENE
  ENSSSCT00000010658.3 UniProtKB/TrEMBL
  ENSSSCT00000022985 ENTREZGENE
  ENSSSCT00000022985.3 UniProtKB/TrEMBL
  ENSSSCT00000053826 ENTREZGENE
  ENSSSCT00000053826.3 UniProtKB/TrEMBL
  ENSSSCT00000083889.1 UniProtKB/TrEMBL
  ENSSSCT00000087439.1 UniProtKB/TrEMBL
  ENSSSCT00015044866.1 UniProtKB/TrEMBL
  ENSSSCT00025029481.1 UniProtKB/TrEMBL
  ENSSSCT00025029506.1 UniProtKB/TrEMBL
  ENSSSCT00025029523.1 UniProtKB/TrEMBL
  ENSSSCT00030080179.1 UniProtKB/TrEMBL
  ENSSSCT00030080206.1 UniProtKB/TrEMBL
  ENSSSCT00030080240.1 UniProtKB/TrEMBL
  ENSSSCT00030080259.1 UniProtKB/TrEMBL
  ENSSSCT00035074182.1 UniProtKB/TrEMBL
  ENSSSCT00035074210.1 UniProtKB/TrEMBL
  ENSSSCT00035074244.1 UniProtKB/TrEMBL
  ENSSSCT00035074254.1 UniProtKB/TrEMBL
  ENSSSCT00035074286.1 UniProtKB/TrEMBL
  ENSSSCT00040070476.1 UniProtKB/TrEMBL
  ENSSSCT00040070741.1 UniProtKB/TrEMBL
  ENSSSCT00040071025.1 UniProtKB/TrEMBL
  ENSSSCT00040071202.1 UniProtKB/TrEMBL
  ENSSSCT00040071434.1 UniProtKB/TrEMBL
  ENSSSCT00040071758.1 UniProtKB/TrEMBL
  ENSSSCT00045030437.1 UniProtKB/TrEMBL
  ENSSSCT00045030615.1 UniProtKB/TrEMBL
  ENSSSCT00045030837.1 UniProtKB/TrEMBL
  ENSSSCT00045030974.1 UniProtKB/TrEMBL
  ENSSSCT00045031270.1 UniProtKB/TrEMBL
  ENSSSCT00060099475.1 UniProtKB/TrEMBL
  ENSSSCT00060099689.1 UniProtKB/TrEMBL
  ENSSSCT00060099908.1 UniProtKB/TrEMBL
  ENSSSCT00060099968.1 UniProtKB/TrEMBL
  ENSSSCT00060100249.1 UniProtKB/TrEMBL
  ENSSSCT00065088204.1 UniProtKB/TrEMBL
  ENSSSCT00070041569.1 UniProtKB/TrEMBL
  ENSSSCT00070041576.1 UniProtKB/TrEMBL
  ENSSSCT00070041581.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene PALLD ENTREZGENE
PANTHER CONTACTIN 5 UniProtKB/TrEMBL
  IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IMMUNOGLOBULIN UniProtKB/TrEMBL
  MYOTILIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287BPI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UXE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1J9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2Q6R9_PIG UniProtKB/TrEMBL
  A0A5G2R855_PIG UniProtKB/TrEMBL
  A0A8D0R8A3_PIG UniProtKB/TrEMBL
  A0A8D0XI86_PIG UniProtKB/TrEMBL
  A0A8D0XIQ5_PIG UniProtKB/TrEMBL
  A0A8D0XIS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XM45_PIG UniProtKB/TrEMBL
  A0A8D1AF91_PIG UniProtKB/TrEMBL
  A0A8D1AGY1_PIG UniProtKB/TrEMBL
  A0A8D1EYX6_PIG UniProtKB/TrEMBL
  A0A8D1EZC6_PIG UniProtKB/TrEMBL
  A0A8D1F204_PIG UniProtKB/TrEMBL
  A0A8D1F2K7_PIG UniProtKB/TrEMBL
  A0A8D1F3Y9_PIG UniProtKB/TrEMBL
  A0A8D1F5K2_PIG UniProtKB/TrEMBL
  A0A8D1HMJ8_PIG UniProtKB/TrEMBL
  A0A8D1HNR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HPU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KYP6_PIG UniProtKB/TrEMBL
  A0A8D1KYS7_PIG UniProtKB/TrEMBL
  A0A8D1WR16_PIG UniProtKB/TrEMBL
  A0A8D1ZSJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BTW4_PIG UniProtKB/TrEMBL
  F1RIW3 ENTREZGENE, UniProtKB/TrEMBL
  I3LH91 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111122 ENTREZGENE