SCP2D1 (SCP2 sterol binding domain containing 1) - Rat Genome Database
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Gene: SCP2D1 (SCP2 sterol binding domain containing 1) Sus scrofa
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Symbol: SCP2D1
Name: SCP2 sterol binding domain containing 1
RGD ID: 14090104
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: SCP2 sterol-binding domain-containing protein 1; uncharacterized protein C20orf79 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1726,980,152 - 26,984,768 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11726,971,791 - 27,128,831 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21730,461,522 - 30,473,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
SCP2D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1726,980,152 - 26,984,768 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11726,971,791 - 27,128,831 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21730,461,522 - 30,473,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCP2D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2018,813,783 - 18,814,378 (+)EnsemblGRCh38hg38GRCh38
GRCh382018,813,783 - 18,814,378 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372018,794,427 - 18,795,022 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh372018,794,370 - 18,795,036 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362018,742,370 - 18,743,036 (+)NCBINCBI36hg18NCBI36
Build 342018,742,369 - 18,743,033NCBI
Celera2018,868,645 - 18,869,311 (+)NCBI
Cytogenetic Map20p11.23NCBI
HuRef2018,757,196 - 18,757,862 (+)NCBIHuRef
CHM1_12018,795,080 - 18,795,746 (+)NCBICHM1_1
Scp2d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392144,665,586 - 144,666,335 (+)NCBIGRCm39mm39
GRCm382144,823,666 - 144,824,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,823,656 - 144,824,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv372144,649,402 - 144,650,151 (+)NCBIGRCm37mm9NCBIm37
MGSCv362144,515,107 - 144,515,855 (+)NCBImm8
Celera2146,019,139 - 146,019,888 (+)NCBICelera
Cytogenetic Map2G1NCBI
Scp2d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23132,201,979 - 132,202,729 (+)NCBI
Rnor_6.0 Ensembl3138,974,871 - 138,975,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03138,973,171 - 138,975,624 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03145,405,170 - 145,405,920 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43133,374,144 - 133,374,894 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13133,279,707 - 133,280,377 (+)NCBI
Celera3131,086,358 - 131,087,108 (+)NCBICelera
Cytogenetic Map3q41NCBI
Scp2d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541527,215,991 - 27,229,799 (+)NCBIChiLan1.0ChiLan1.0
SCP2D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12018,746,151 - 18,746,811 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2018,746,235 - 18,746,705 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02018,775,971 - 18,776,631 (+)NCBIMhudiblu_PPA_v0panPan3
SCP2D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl244,400,097 - 4,401,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1244,400,768 - 4,411,013 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Scp2d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364851,464,896 - 1,465,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCP2D1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1247,855,831 - 47,856,625 (+)NCBI
ChlSab1.1 Ensembl247,856,061 - 47,856,531 (+)Ensembl
Scp2d1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474119,425,894 - 19,426,364 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system musculoskeletal system nervous system reproductive system
High
Medium
Low 1 1 1 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000007771   ⟹   ENSSSCP00000007562
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1726,980,152 - 26,984,768 (+)Ensembl
RefSeq Acc Id: XM_013985108   ⟹   XP_013840562
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 26,985,354 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077999   ⟹   XP_020933658
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 26,985,354 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078000   ⟹   XP_020933659
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,971,791 - 26,985,354 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002340051
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 27,128,831 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002340052
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 27,128,831 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002340053
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 27,050,307 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002340054
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,972,347 - 27,050,307 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002340055
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11726,971,792 - 27,128,831 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013840562 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933658 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933659 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020933659   ⟸   XM_021078000
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013840562   ⟸   XM_013985108
- Peptide Label: isoform X2
- UniProtKB: F1SBH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933658   ⟸   XM_021077999
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000007562   ⟸   ENSSSCT00000007771
Protein Domains
SCP2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007099 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00070021083 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000007562 UniProtKB/TrEMBL
  ENSSSCP00070035166 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007771 UniProtKB/TrEMBL
  ENSSSCT00070041870 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1050.10 UniProtKB/TrEMBL
InterPro SCP2_sterol-bd_dom UniProtKB/TrEMBL
  SCP2_sterol-bd_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100739089 UniProtKB/TrEMBL
NCBI Gene SCP2D1 ENTREZGENE
Pfam SCP2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55718 UniProtKB/TrEMBL
UniProt A0A4X1V263_PIG UniProtKB/TrEMBL
  F1SBH0 ENTREZGENE, UniProtKB/TrEMBL