DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13) - Rat Genome Database

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Gene: DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13) Sus scrofa
Analyze
Symbol: DNAJB13
Name: DnaJ heat shock protein family (Hsp40) member B13
RGD ID: 14089815
Description: INVOLVED IN axonemal central apparatus assembly (inferred); ASSOCIATED WITH intellectual disability (ortholog); primary ciliary dyskinesia (ortholog); primary ciliary dyskinesia 34 (ortholog); FOUND IN cytoplasm (ortholog); motile cilium (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: DnaJ (Hsp40) related, subfamily B, member 13; dnaJ homolog subfamily B member 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl98,342,476 - 8,355,406 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.198,342,207 - 8,358,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.299,131,889 - 9,161,469 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
DNAJB13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl98,342,476 - 8,355,406 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.198,342,207 - 8,358,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.299,131,889 - 9,161,469 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1173,951,026 - 73,970,366 (+)EnsemblGRCh38hg38GRCh38
GRCh381173,950,621 - 73,970,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371173,662,071 - 73,681,326 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,339,012 - 73,358,980 (+)NCBINCBI36hg18NCBI36
Celera1170,968,115 - 70,988,077 (+)NCBI
Cytogenetic Map11q13.4NCBI
HuRef1169,957,148 - 69,977,098 (+)NCBIHuRef
CHM1_11173,544,984 - 73,565,191 (+)NCBICHM1_1
Dnajb13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,152,218 - 100,182,834 (-)NCBIGRCm39mm39
GRCm39 Ensembl7100,150,923 - 100,164,167 (-)Ensembl
GRCm387100,503,011 - 100,514,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,501,716 - 100,514,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv377107,651,529 - 107,663,324 (-)NCBIGRCm37mm9NCBIm37
MGSCv367100,377,102 - 100,388,897 (-)NCBImm8
Celera7100,840,594 - 100,852,770 (-)NCBICelera
Cytogenetic Map7E2NCBI
Dnajb13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21154,848,586 - 154,863,042 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1154,848,594 - 154,862,963 (-)Ensembl
Rnor_6.01165,515,718 - 165,530,163 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,515,726 - 165,530,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,716,964 - 171,731,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,931,493 - 157,945,870 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11158,010,293 - 158,024,663 (-)NCBI
Celera1152,931,878 - 152,946,255 (-)NCBICelera
Cytogenetic Map1q32NCBI
Dnajb13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541417,597,478 - 17,613,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541417,599,549 - 17,613,724 (-)NCBIChiLan1.0ChiLan1.0
DNAJB13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11172,330,907 - 72,350,025 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,330,992 - 72,349,858 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01169,022,757 - 69,043,006 (+)NCBIMhudiblu_PPA_v0panPan3
DNAJB13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12124,314,242 - 24,326,605 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2124,314,248 - 24,338,253 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2124,081,296 - 24,093,657 (-)NCBI
ROS_Cfam_1.02124,520,646 - 24,533,012 (-)NCBI
UMICH_Zoey_3.12124,316,174 - 24,328,541 (-)NCBI
UNSW_CanFamBas_1.02124,516,090 - 24,528,456 (-)NCBI
UU_Cfam_GSD_1.02124,431,423 - 24,443,781 (-)NCBI
Dnajb13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,442,502 - 61,456,388 (+)NCBI
SpeTri2.0NW_0049364983,042,151 - 3,055,966 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,211,142 - 65,233,948 (+)NCBI
ChlSab1.1 Ensembl165,217,224 - 65,235,556 (+)Ensembl
Vero_WHO_p1.0NW_02366604360,651,238 - 60,672,126 (-)NCBI
Dnajb13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248173,078,578 - 3,093,273 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 6 2 1 5 2 19 2 3
Below cutoff 1 2 2 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016184   ⟹   ENSSSCP00000015751
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl98,342,476 - 8,355,406 (+)Ensembl
RefSeq Acc Id: NM_001195121   ⟹   NP_001182050
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.198,342,475 - 8,355,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667093   ⟹   XP_005667150
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.198,342,207 - 8,358,617 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182050 (Get FASTA)   NCBI Sequence Viewer  
  XP_005667150 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADK36688 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005667150   ⟸   XM_005667093
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001182050   ⟸   NM_001195121
- UniProtKB: E2IUK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000015751   ⟸   ENSSSCT00000016184
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014832 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070018973 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000015751 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070031324 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016184 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070037465 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro DnaJ_C UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  HSP40/DnaJ_pept-bd UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100499566 UniProtKB/TrEMBL
NCBI Gene DNAJB13 ENTREZGENE
Pfam DnaJ UniProtKB/TrEMBL
  DnaJ_C UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF49493 UniProtKB/TrEMBL
UniProt A0A4X1UMR1_PIG UniProtKB/TrEMBL
  E2IUK7 ENTREZGENE, UniProtKB/TrEMBL
  F1SUR7_PIG UniProtKB/TrEMBL