NDUFB1 (NADH:ubiquinone oxidoreductase subunit B1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NDUFB1 (NADH:ubiquinone oxidoreductase subunit B1) Sus scrofa
Analyze
Symbol: NDUFB1
Name: NADH:ubiquinone oxidoreductase subunit B1
RGD ID: 14089749
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH achondrogenesis type IA (ortholog); genetic disease (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7113,652,776 - 113,659,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17113,652,772 - 113,659,937 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,296,368 - 120,298,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NDUFB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7113,652,776 - 113,659,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17113,652,772 - 113,659,937 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,296,368 - 120,298,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381492,116,123 - 92,121,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1492,116,122 - 92,121,917 (-)EnsemblGRCh38hg38GRCh38
GRCh371492,582,467 - 92,588,050 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361491,652,220 - 91,657,906 (-)NCBINCBI36Build 36hg18NCBI36
Build 341491,652,222 - 91,657,906NCBI
Celera1472,635,062 - 72,640,748 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1472,763,625 - 72,769,332 (-)NCBIHuRef
CHM1_11492,520,767 - 92,526,453 (-)NCBICHM1_1
T2T-CHM13v2.01486,345,661 - 86,351,545 (-)NCBIT2T-CHM13v2.0
Ndufb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912101,934,355 - 101,941,997 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12101,934,349 - 101,943,327 (-)EnsemblGRCm39 Ensembl
GRCm3812101,968,096 - 101,975,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12101,968,090 - 101,977,068 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712103,196,484 - 103,215,278 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,213,954 - 103,215,277 (-)NCBIMGSCv36mm8
Celera12103,185,244 - 103,194,202 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.33NCBI
Ndufb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86126,880,537 - 126,888,935 (-)NCBIGRCr8
mRatBN7.26121,115,649 - 121,124,055 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx6121,265,229 - 121,272,427 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06121,560,488 - 121,567,686 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06120,896,802 - 120,904,000 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06125,861,219 - 125,870,231 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06135,072,699 - 135,081,701 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6118,612,814 - 118,620,112 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ndufb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543814,443,558 - 14,449,754 (-)NCBIChiLan1.0ChiLan1.0
NDUFB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21593,274,902 - 93,280,853 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11492,491,412 - 92,497,363 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01472,751,276 - 72,757,264 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11492,093,381 - 92,099,244 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1492,093,381 - 92,099,244 (-)Ensemblpanpan1.1panPan2
LOC111096466
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,282,378 - 12,284,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,756,337 - 13,756,623 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,377,184 - 12,377,470 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1612,231,766 - 12,232,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,164,977 - 12,165,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,442,342 - 12,442,628 (+)NCBIUU_Cfam_GSD_1.0
Ndufb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,100,147 - 13,107,122 (+)NCBIHiC_Itri_2
NDUFB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,867,172 - 69,872,978 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,867,175 - 69,872,881 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605357,116,475 - 57,122,262 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247348,730,532 - 8,737,084 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFB1
255 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000002719   ⟹   ENSSSCP00000002650
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7113,652,776 - 113,659,672 (-)Ensembl
RefSeq Acc Id: XM_003482306   ⟹   XP_003482354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17113,652,772 - 113,659,937 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003482354   ⟸   XM_003482306
- Sequence:
RefSeq Acc Id: ENSSSCP00000002650   ⟸   ENSSSCT00000002719


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002449 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005036686 UniProtKB/TrEMBL
  ENSSSCG00015013519 UniProtKB/TrEMBL
  ENSSSCG00025000849 UniProtKB/TrEMBL
  ENSSSCG00030073521 UniProtKB/TrEMBL
  ENSSSCG00035037676 UniProtKB/TrEMBL
  ENSSSCG00040039652 UniProtKB/TrEMBL
  ENSSSCG00045035295 UniProtKB/TrEMBL
  ENSSSCG00050061136 UniProtKB/TrEMBL
  ENSSSCG00055002862 UniProtKB/TrEMBL
  ENSSSCG00060046639 UniProtKB/TrEMBL
  ENSSSCG00065072303 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002719.5 UniProtKB/TrEMBL
  ENSSSCT00005058631.1 UniProtKB/TrEMBL
  ENSSSCT00015017942.1 UniProtKB/TrEMBL
  ENSSSCT00025001031.1 UniProtKB/TrEMBL
  ENSSSCT00030102959.1 UniProtKB/TrEMBL
  ENSSSCT00035049934.1 UniProtKB/TrEMBL
  ENSSSCT00040053078.1 UniProtKB/TrEMBL
  ENSSSCT00045060654.1 UniProtKB/TrEMBL
  ENSSSCT00050083320.1 UniProtKB/TrEMBL
  ENSSSCT00055005483.1 UniProtKB/TrEMBL
  ENSSSCT00060063315.1 UniProtKB/TrEMBL
  ENSSSCT00065099364.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_MNLL_su UniProtKB/TrEMBL
KEGG Report ssc:100739619 UniProtKB/TrEMBL
NCBI Gene NDUFB1 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 1 UniProtKB/TrEMBL
  PTHR15222 UniProtKB/TrEMBL
Pfam NADH_oxidored UniProtKB/TrEMBL
UniProt A0A8D1J6F0_PIG UniProtKB/TrEMBL
  A0A8D2CGH8_PIG UniProtKB/TrEMBL
UniProt Secondary F1SD73 UniProtKB/TrEMBL