CEACAM16 (CEA cell adhesion molecule 16, tectorial membrane component) - Rat Genome Database

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Gene: CEACAM16 (CEA cell adhesion molecule 16, tectorial membrane component) Sus scrofa
Analyze
Symbol: CEACAM16
Name: CEA cell adhesion molecule 16, tectorial membrane component
RGD ID: 14088386
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 4A (ortholog); autosomal dominant nonsyndromic deafness 4B (ortholog); autosomal recessive nonsyndromic deafness 113 (ortholog); FOUND IN extracellular space (inferred); stereocilium tip (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carcinoembryonic antigen related cell adhesion molecule 16; carcinoembryonic antigen-related cell adhesion molecule 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,220,812 - 51,231,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,217,085 - 51,228,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,116,033 - 47,127,421 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CEACAM16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,220,812 - 51,231,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,217,085 - 51,228,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,116,033 - 47,127,421 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEACAM16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,699,151 - 44,710,718 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,699,151 - 44,710,718 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,202,421 - 45,213,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,894,198 - 49,905,826 (+)NCBINCBI36Build 36hg18NCBI36
Celera1942,006,785 - 42,018,350 (+)NCBICelera
Cytogenetic Map19q13.31-q13.32NCBI
HuRef1941,634,688 - 41,646,253 (+)NCBIHuRef
CHM1_11945,205,101 - 45,216,664 (+)NCBICHM1_1
T2T-CHM13v2.01947,523,898 - 47,535,467 (+)NCBIT2T-CHM13v2.0
Ceacam16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,586,022 - 19,595,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,586,022 - 19,595,224 (-)EnsemblGRCm39 Ensembl
GRCm38719,852,097 - 19,871,426 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,852,097 - 19,861,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,437,446 - 20,446,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36719,010,622 - 19,019,758 (-)NCBIMGSCv36mm8
Celera717,260,143 - 17,269,345 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.95NCBI
Ceacam16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,642,925 - 88,652,821 (-)NCBIGRCr8
mRatBN7.2179,514,975 - 79,524,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,514,975 - 79,524,871 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,909,445 - 84,919,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,460,172 - 93,470,165 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,664,566 - 86,674,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,773,819 - 80,783,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,773,819 - 80,783,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,039,102 - 82,049,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,166,356 - 79,176,252 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,201,314 - 79,282,028 (-)NCBI
Celera173,972,883 - 73,982,778 (-)NCBICelera
Cytogenetic Map1q21NCBI
Ceacam16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,859,220 - 1,878,912 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,859,220 - 1,878,912 (+)NCBIChiLan1.0ChiLan1.0
CEACAM16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,861,248 - 50,868,036 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,733,189 - 52,739,986 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,649,625 - 41,659,151 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,251,835 - 50,262,600 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,254,123 - 50,262,808 (+)Ensemblpanpan1.1panPan2
CEACAM16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,652,362 - 110,661,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,652,584 - 110,660,334 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,134,189 - 110,141,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,215,199 - 111,223,185 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,215,193 - 111,223,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,857,177 - 110,864,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,492,839 - 110,500,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,362,287 - 111,370,066 (-)NCBIUU_Cfam_GSD_1.0
Ceacam16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,043,394 - 17,050,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,391,814 - 1,396,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,390,737 - 1,396,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEACAM16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,179,822 - 38,189,731 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,180,658 - 38,187,342 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,744,958 - 17,756,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ceacam16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,631,279 - 1,638,266 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,627,941 - 1,638,436 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CEACAM16
196 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low 7 2 3 5 2 14 2 1
Below cutoff 1 5 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000034675   ⟹   ENSSSCP00000029984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl651,220,812 - 51,231,761 (+)Ensembl
RefSeq Acc Id: XM_021097551   ⟹   XP_020953210
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1651,217,085 - 51,228,458 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020953210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000029984.3
Reference Protein Sequences
RefSeq Acc Id: XP_020953210   ⟸   XM_021097551
- Sequence:
RefSeq Acc Id: ENSSSCP00000029984   ⟸   ENSSSCT00000034675
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003081 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000034675.4 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene CEACAM16 ENTREZGENE
PANTHER CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 16 UniProtKB/TrEMBL
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt K7GQ18_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96943 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-27 CEACAM16  CEA cell adhesion molecule 16, tectorial membrane component  CEACAM16  carcinoembryonic antigen related cell adhesion molecule 16  Symbol and/or name change 5135510 APPROVED