FAM177A1 (family with sequence similarity 177 member A1)

Gene: FAM177A1 (family with sequence similarity 177 member A1) Sus scrofa

Analyze

Symbol:

FAM177A1

Name:

family with sequence similarity 177 member A1

RGD ID:

14088145

Description:

ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); genetic disease (ortholog); INTERACTS WITH ammonia

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

protein FAM177A1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	64,788,077 - 64,808,473 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	64,788,829 - 64,808,640 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	69,618,807 - 69,636,919 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

ectodermal dysplasia and immunodeficiency 2 (ISO)

genetic disease (ISO)

Macrocephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

ammonia (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463

Genomics

Comparative Map Data

FAM177A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	64,788,077 - 64,808,473 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	64,788,829 - 64,808,640 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	69,618,807 - 69,636,919 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM177A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	35,044,907 - 35,083,383 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	35,045,117 - 35,116,630 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	35,514,113 - 35,552,589 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	14	q13.2	NCBI
HuRef	14	15,626,781 - 15,665,252 (+)	NCBI		HuRef
CHM1_1	14	35,513,864 - 35,552,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	29,241,864 - 29,280,312 (+)	NCBI		T2T-CHM13v2.0

Fam177a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	55,171,313 - 55,188,889 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	55,171,254 - 55,188,889 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	55,124,435 - 55,142,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	55,124,469 - 55,142,104 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	56,225,515 - 56,243,091 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	49,662,763 - 49,680,343 (+)	NCBI		MGSCv36	mm8
MGSCv36	12	56,042,658 - 56,060,234 (+)	NCBI		MGSCv36	mm8
Celera	12	56,419,532 - 56,457,279 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	23.87	NCBI

Fam177a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	78,367,780 - 78,382,703 (+)	NCBI		GRCr8
mRatBN7.2	6	72,632,628 - 72,647,553 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	72,632,623 - 72,647,553 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	73,055,248 - 73,070,186 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	73,361,597 - 73,376,537 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	72,790,230 - 72,805,149 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	76,041,080 - 76,055,912 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	76,041,669 - 76,053,759 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	85,577,837 - 85,592,624 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	75,501,445 - 75,513,944 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	71,473,300 - 71,488,310 (+)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

FAM177A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	13,844,565 - 13,862,619 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	13,844,685 - 13,860,889 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	13,641,509 - 13,659,550 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	13,951,498 - 13,969,550 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	13,951,474 - 13,968,204 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	13,653,177 - 13,671,230 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	13,717,477 - 13,735,558 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	14,006,731 - 14,024,846 (+)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in FAM177A1
386 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	9		3			21		3	1
Low	1	4		5	2	2	2		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001190218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005656298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU469145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01016352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000065355 ⟹ ENSSSCP00000045382

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	64,788,575 - 64,808,444 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065901 ⟹ ENSSSCP00000048410

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	64,788,077 - 64,808,473 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000091009 ⟹ ENSSSCP00000065190

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	64,788,077 - 64,808,473 (-)	Ensembl

RefSeq Acc Id:

NM_001190218 ⟹ NP_001177147

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	64,790,453 - 64,808,444 (-)	NCBI

Sequence:

show sequence

AGTTTTACTTCCTGACAGCGGGCTAGGACGGCGCCTGGGAGGGGAGGCGGAGGATGGAAGTGGG
CTTATCGGCCGTGACCTTGTATCTCGCCAGCGCCAGCAGTCCTGCGGCGGCGACAATGATGGAC
CGGGAGCCAGTGAACCGGGAGGAGGGAGGAGAAGCAGTGGGTGTCTCCGGAGCTGCGGCCGCCT
CGGCGTTCAGGGAATCGTCTCGGCAGATGAGTAATGACAGAGGCTTTGAAAATGTAGAACTGGG
AGTCATAGGAAAAAAGAAGAAAGTCCCAAGGAGAGTCATCCACTTCGTCAGTGGTGAGACAATG
GAAGAATACAGCACAGATGAGGATGAGGTCGATGGCCTGGAGAAGAAGGATGTTTTACCCACTG
TTGATCCGACAAAACTTACCTGGGGCCCATACTTATGGTTTTACATGCTTCGTGCTGCCACATC
AACCCTCTCAGTATGTGACTTCCTTGGAGAAAAGATTGCGTCTGTTTTGGGCATCAGCACCCCA
AAATACCAGTATGCCATCGATGAGTATTACCGGATGAAGAAGGAGGAAGAAGAAGAAGAAGAAG
AAAATAGAATGTCTGAAGAAGCAGAAAGGCAGTACCAACAAAATAAGATGCAGGCTGATTCCAC
TGTCCAGTCAGATCAACCAGAAACACTGGTATCCAGTTCATTTGTGAATCTCAATTTTGAAATG
GAGGGAGATTGTGAAGTAATTATGGAAAGCAAACAAAATCCAGTCCCTGTCCCTCTGTAGAATG
AAATGACTATCAAACTTCTAAGTTTTTTTTTTTAAACCAGAAACTTCACATTCTATATTCTGTG
GGACTTAATACAGTTATTTATACTTTAAATTATTAAGTTATCTGCAAAGGAAAAGTGTTTCTTT
ATTCTTAGGCTCTATCAAAAGCCAGATTTGAAATTTGGATATTTGTACTATGCTTTTAACTGTG
TCAAATTAGTACTTTGGTTTTAAAATGATCTTTAAAAAAATTTAAGGACATTCTAGAGCCCTAA
CCACCAATTAAAAAGAGTTAAATTATCAAGCTTGTCTGTTTATAAGGAAAAAATAATTAGGTAA
GTTACTGATTAAGGCCAGTTGAGCTGGTATTTGTAGTCTTAGATTAAAAATAAGGATTTTTCCC
CCCCTAGATTTTCTTATGTCTTACGTTTATATATCTAACCATTCATTACATAGTAAGGATGGTT
CACTGAGTGTGTAATAAAAGGAGCAAGATAAAAGCATTTTGAATTTTCTTTCCTTGAGAATAAT
TTTATTTCATGGGAAGGTGATCAAGTTTATACACTACCAAATATAAAGATGGTTTTCCATTTTT
TAATGAAGGCTACTTAATCTTATGTTCTCTTTTAGTAGTTAGACTTAAATAACTAAATTTTAGT
GTTAAAAAACACTAGTAATGGGATGAATTTATTAATGTAATTGTATTCAAGTGGTGATACCTAG
TGATTATCCATATGGCATGCTGGTTATGTCACTCATTCAGCCCTGAGTGCCTCCTATGGGTCAA
GTAGTTGCAGGATGAGAGTGAGGAATAGACGAAGACCGAAACCCTCCAGGGGCTCACTGTTAAA
TAGTGTACAAGATGCATTGGTAGCATAATTAAGTTCTTGTCATTCATCACTTCGACATAACGAC
AGTGGATGGTTTACTCGACCCAGGTTGGCCATCTCTGTACCCACTGTGCTATTAGCAGGTTTTA
CAAATGTATAATGTGAATCCCATTTTGAAAATATTCCTGTATATGTTCAGAATCTTATATGTGT
ATGACTTTGACTTGTAACTAAATGTGGGTAAGGAAAAATGTGTGGAGTTATAACTAAATGTGAA
TAAGGAAAAACGTGTGCACTATTTCAGAAACACTGCTCTTAACCTATTCACAACCCTAAAGGGC
TTTTAGAGAGTAATGGTTGTTAGTAGCCTTCTAAATAGTATTAAGCTTTCAATCCTAAATATAT
CTGTATAAAGTATAGCTTCAAAAAAACAACAAAGGCACATTGGGCTTATTATGGAAGTCTTTTT
ATCAATGAACATGAACATCTGGCCACTAAATTCTTTAACTGAAATTTGAAGGATTTAGAAAAGG
TAATTCTTTATTAGGAAATCACAGTTGCATCGATTCATGGTATAGTGGTTCATGGTATGTGTTG
ATAATCCTTTTAGTTATGGGTGTAAACTATATAATGTAGTGCTTAGAGGTTTAATCTTCAGATG
ATGTAATGTCACCATAAATTGTAGTTTACCAATAGCTCTACAGTGCTAACCTGATATGTTCCTT
GTAATTTGTTTTTATCTTCATCTGAGAAGATATTCAAATTTAGATACTTATTCGGTTATCCAGT
GAAGGCAAGCATATCTAAAGGCATCTGAATCAGCTCTCCCTAGAGGCACTAAATCCTAAAAGAG
TTTACTCAGAAACTTACCTGATTGTAGAAGATAATGATGTATGAAGGTTTTACATTTCTTGAAT
TTTACTTTTTCTACTTGTCCAACAGTGGCCAGTTTATAATGTTTATATAGTTATTCACTGTGCC
TTAAATTTTTATATTTTTATTTATGCAAACTATAAAATTTCCCATAAATGCATTAAATGGTTTT
GTCTTTTT

hide sequence

RefSeq Acc Id:

XM_005656298 ⟹ XP_005656355

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	64,788,829 - 64,808,640 (-)	NCBI

Sequence:

show sequence

TGGTACTGCAGAAGGCCCCGCCCCGCAGGAGCCATTTGTTGCGCGGTTCAGACAGCCCTCAGTT
AGAGCCCCTGTGTCGCGCCTGCGGGGCGGGGCGCCTGTGGGCCCCGCCCCTCAGGCCGGCCCCA
CCTCAAGGCCGCCCCGCCCCTCCCGCAGTGGTGAGCTCGGGCGCGGCGCGAGGCGGGCGCTAGG
GCGCCAGCAGTCCTGCGGCGGCGACAATGATGGACCGGGAGCCAGTGAACCGGGAGGAGGGAGG
AGAAGCAGTGGGTGTCTCCGGAGCTGCGGCCGCCTCGGCGTTCAGGGAATCGTCTCGGCAGATG
AGTAATGACAGAGGCTTTGAAAATGTAGAACTGGGAGTCATAGGAAAAAAGAAGAAAGTCCCAA
GGAGAGTCATCCACTTCGTCAGTGGTGAGACAATGGAAGAATACAGCACAGATGAGGATGAGGT
CGATGGCCTGGAGAAGAAGGATGTTTTACCCACTGTTGATCCGACAAAACTTACCTGGGGCCCA
TACTTATGGTTTTACATGCTTCGTGCTGCCACATCAACCCTCTCAGTATGTGACTTCCTTGGAG
AAAAGATTGCGTCTGTTTTGGGCATCAGCACCCCAAAATACCAGTATGCCATCGATGAGTATTA
CCGGATGAAGAAGGAGGAAGAAGAAGAAGAAGAAGAAAATAGAATGTCTGAAGAAGCAGAAAGG
CAGTACCAACAAAATAAGATGCAGGCTGATTCCACTGTCCAGTCAGATCAACCAGAAACACTGG
TATCCAGTTCATTTGTGAATCTCAATTTTGAAATGGAGGGAGATTGTGAAGTAATTATGGAAAG
CAAACAAAATCCAGTCCCTGTCCCTCTGTAGAATGAAATGACTATCAAACTTCTAAGTTTTTTT
TTTTAAACCAGAAACTTCACATTCTATATTCTGTGGGACTTAATACAGTTATTTATACTTTAAA
TTATTAAGTTATCTGCAAAGGAAAAGTGTTTCTTTATTCTTAGGCTCTATCAAAAGCCAGATTT
GAAATTTGGATATTTGTACTATGCTTTTAACTGTGTCAAATTAGTACTTTGGTTTTAAAATGAT
CTTTAAAAAAATTTAAGGACATTCTAGAGCCCTAACCACCAATTAAAAAGAGTTAAATTATCAA
GCTTGTCTGTTTATAAGGAAAAAATAATTAGGTAAGTTACTGATTAAGGCCAGTTGAGCTGGTA
TTTGTAGTCTTAGATTAAAAATAAGGATTTTTCCCCCCCTAGATTTTCTTATGTCTTACGTTTA
TATATCTAACCATTCATTACATAGTAAGGATGGTTCACTGAGTGTGTAATAAAAGGAGCAAGAT
AAAAGCATTTTGAATTTTCTTTCCTTGAGAATAATTTTATTTCATGGGAAGGTGATCAAGTTTA
TACACTACCAAATATAAAGATGGTTTTCCATTTTTTAATGAAGGCTACTTAATCTTATGTTCTC
TTTTAGTAGTTAGACTTAAATAACTAAATTTTAGTGTTAAAAAACACTAGTAATGGGATGAATT
TATTAATGTAATTGTATTCAAGTGGTGATACCTAGTGATTATCCATATGGCATGCTGGTTATGT
CACTCATTCAGCCCTGAGTGCCTCCTATGGGTCAAGTAGTTGCAGGATGAGAGTGAGGAATAGA
CGAAGACCGAAACCCTCCAGGGGCTCACTGTTAAATAGTGTACAAGATGCATTGGTAGCATAAT
TAAGTTCTTGTCATTCATCACTTCGACATAACGACAGTGGATGGTTTACTCGACCCAGGTTGGC
CATCTCTGTACCCACTGTGCTATTAGCAGGTTTTACAAATGTATAATGTGAATCCCATTTTGAA
AATATTCCTGTATATGTTCAGAATCTTATATGTGTATGACTTTGACTTGTAACTAAATGTGGGT
AAGGAAAAATGTGTGGAGTTATAACTAAATGTGAATAAGGAAAAACGTGTGCACTATTTCAGAA
ACACTGCTCTTAACCTATTCACAACCCTAAAGGGCTTTTAGAGAGTAATGGTTGTTAGTAGCCT
TCTAAATAGTATTAAGCTTTCAATCCTAAATATATCTGTATAAAGTATAGCTTCAAAAAAACAA
CAAAGGCACATTGGGCTTATTATGGAAGTCTTTTTATCAATGAACATGAACATCTGGCCACTAA
ATTCTTTAACTGAAATTTGAAGGATTTAGAAAAGGTAATTCTTTATTAGGAAATCACAGTTGCA
TCGATTCATGGTATAGTGGTTCATGGTATGTGTTGATAATCCTTTTAGTTATGGGTGTAAACTA
TATAATGTAGTGCTTAGAGGTTTAATCTTCAGATGATGTAATGTCACCATAAATTGTAGTTTAC
CAATAGCTCTACAGTGCTAACCTGATATGTTCCTTGTAATTTGTTTTTATCTTCATCTGAGAAG
ATATTCAAATTTAGATACTTATTCGGTTATCCAGTGAAGGCAAGCATATCTAAAGGCATCTGAA
TCAGCTCTCCCTAGAGGCACTAAATCCTAAAAGAGTTTACTCAGAAACTTACCTGATTGTAGAA
GATAATGATGTATGAAGGTTTTACATTTCTTGAATTTTACTTTTTCTACTTGTCCAACAGTGGC
CAGTTTATAATGTTTATATAGTTATTCACTGTGCCTTAAATTTTTATATTTTTATTTATGCAAA
CTATAAAATTTCCCATAAATGCATTAAATGGTTTTGTCTTTTTAAGCCTCTTTCACTTTTTCTT
CCTTTTCATCCCTTTTAATAATTACTGTTCCTTCTGAATCACAGTTCATGCTATTCTAGCCTAT
TCTTTCATTTCATTTAAACTAAACAGTATAATTGAGAATCTTTACACTCAGTAACAAATTCTGT
AACAAAATTCCTTAGCAAAATTGAGTCGTTTTGTAAAGTGTAACCCTGATGCTGGTTAATAACG
CTAGGCAAGTTTTTTCTTTTCCTGTCTTTTGTCTTTTTTTTTTTTAGCACAGCACCCGCGGCAT
ATGGAGGTTCCCAGGCTAGGGGGTCTAATCAGAGCTACAGCTGCTGGCCTACACCACAGCCACA
GCAACGCCAGATCTGAGCTGCATCTGCAACCTACACCACAGTTCATTGCAATGCCGGATCCTTA
ACCCACTGAGTAAGGCCAGGGATTGAACCCACAACCTCATCGTTCCCAGTTGGATTTGTTTCTG
TTGCATCACAACAGGAACTCCCAGGCTTTTAATACCAATGATTTTAATTAAAGTAAAATACTAA
TAATTTGAATACTTTTTATTGAAACATCCTGTTAAAATAAACATCATATCCAACCACTTCCCAG
AAATGAAATGGCTTTACTCTGATGAATGGGAAAGTCCATAATCTTTGATATACCTAATACTTTA
GAAGAAGATTCAAGGTTAAATGGTGGAATTTAAACTATCCTTCCAATATTCAAATTCTTAATGA
CTCATGTCAGCAATATTACCTGAAAACTTCCTTTTACTTCTGAAGATTATACAGACTTAAAGTG
GACTCCTCTCTTCACCAAATCACACCTGCCACATTTGAGCTAAGCGCTTAGAATCAGAATTTAT
GACCTCGTAATTTGGTCCCATTGCTTCTAGACAACTGCCACCAAAATTCCAATAACCAGAACAT
TTGCTGTATTCTATAGGCATATGAACTGTTTTATTTAGACCATTTCTAAGGATTCTGCTTCAAA
GGTTTTACATGTAGCATTCAGACTTATCTTAATGAATAAAGTCTAGTCTTTGCGAGATCATGTA
TCATCAAGGTCCGTAGAATTTTCATTATCATTTGCAACAAGGGCTTCCCTATTCTCGTAAGTCC
AAAAGCCATTCAGATCAATTAGAATGGTGGTGACTGTGTCACCTTGATTACTGTTGATTAAATC
CTGAAGAGAAATCTTCAAAGGATCCTTTGGTTTTACCATATCAAAGATTTCATCCTATAAGAGA
AAAAAAAATAACATCTGCTATCTGATTCACTTAATTTCTGTAACACAGTGATATAAAATTCAGG
GCTGGCACTTGAGCTATGCAAATTTTTTTGTTCCAGTTTTTTTTTTTTTTTTTCCCCATTTAAT
AGGCAATCACCTCTTCTACATGTACACCGAATTTTACTGGAAGATTCCTTAGGTACAAGCATAC
CCCTGGAAATATTTTGGGTTCATTCCAGACCATCGCAATAAGGCAATGTCACAATAAAGCGAGT
CATGCGAATTTTTTGGTTTCTCACTGAATATAAAAAGTTATGTTTACACTCTATGCTATTAAGT
GTGCAAAAGCATTATGTCTAATAAAACAATGTACATACCTTAAGTACTTCATGGCTAAAAATGC
TAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001177147	(Get FASTA)	NCBI Sequence Viewer
	XP_005656355	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045382.2
	ENSSSCP00000048410
	ENSSSCP00000048410.1
	ENSSSCP00000065190.1
	ENSSSCP00025041953.1
	ENSSSCP00030038298.1
	ENSSSCP00035043622.1
	ENSSSCP00035043658.1
	ENSSSCP00040021319.1
	ENSSSCP00045011095.1
	ENSSSCP00050003443.1
	ENSSSCP00055047537.1
	ENSSSCP00055047582.1
	ENSSSCP00060044715.1
	ENSSSCP00065037149.1
	ENSSSCP00070011561.1
	ENSSSCP00070011566.1
	ENSSSCP00070011574.1

RefSeq Acc Id:	XP_005656355 ⟸ XM_005656298
- Peptide Label:	isoform X1
- UniProtKB:	A0A287AWY8 (UniProtKB/TrEMBL), A0A4X1T870 (UniProtKB/TrEMBL), A0A8D1KA99 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMDREPVNREEGGEAVGVSGAAAASAFRESSRQMSNDRGFENVELGVIGKKKKVPRRVIHFVSG ETMEEYSTDEDEVDGLEKKDVLPTVDPTKLTWGPYLWFYMLRAATSTLSVCDFLGEKIASVLGI STPKYQYAIDEYYRMKKEEEEEEEENRMSEEAERQYQQNKMQADSTVQSDQPETLVSSSFVNLN FEMEGDCEVIMESKQNPVPVPL hide sequence

RefSeq Acc Id:

NP_001177147 ⟸ NM_001190218

- UniProtKB:

A0A8D1KA99 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVGLSAVTLYLASASSPAAATMMDREPVNREEGGEAVGVSGAAAASAFRESSRQMSNDRGFEN
VELGVIGKKKKVPRRVIHFVSGETMEEYSTDEDEVDGLEKKDVLPTVDPTKLTWGPYLWFYMLR
AATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEENRMSEEAERQYQQNKMQ
ADSTVQSDQPETLVSSSFVNLNFEMEGDCEVIMESKQNPVPVPL

hide sequence

RefSeq Acc Id:

ENSSSCP00000045382 ⟸ ENSSSCT00000065355

RefSeq Acc Id:

ENSSSCP00000048410 ⟸ ENSSSCT00000065901

RefSeq Acc Id:

ENSSSCP00000065190 ⟸ ENSSSCT00000091009

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000034753	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025069554	UniProtKB/TrEMBL
	ENSSSCG00030059659	UniProtKB/TrEMBL
	ENSSSCG00035075269	UniProtKB/TrEMBL
	ENSSSCG00040038319	UniProtKB/TrEMBL
	ENSSSCG00045009427	UniProtKB/TrEMBL
	ENSSSCG00050005966	UniProtKB/TrEMBL
	ENSSSCG00055029861	UniProtKB/TrEMBL
	ENSSSCG00060074886	UniProtKB/TrEMBL
	ENSSSCG00065061965	UniProtKB/TrEMBL
	ENSSSCG00070007275	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000065355.3	UniProtKB/TrEMBL
	ENSSSCT00000065901	ENTREZGENE
	ENSSSCT00000065901.2	UniProtKB/TrEMBL
	ENSSSCT00000091009.1	UniProtKB/TrEMBL
	ENSSSCT00025095569.1	UniProtKB/TrEMBL
	ENSSSCT00030083339.1	UniProtKB/TrEMBL
	ENSSSCT00035102312.1	UniProtKB/TrEMBL
	ENSSSCT00035102371.1	UniProtKB/TrEMBL
	ENSSSCT00040051365.1	UniProtKB/TrEMBL
	ENSSSCT00045016004.1	UniProtKB/TrEMBL
	ENSSSCT00050008103.1	UniProtKB/TrEMBL
	ENSSSCT00055059353.1	UniProtKB/TrEMBL
	ENSSSCT00055059408.1	UniProtKB/TrEMBL
	ENSSSCT00060102568.1	UniProtKB/TrEMBL
	ENSSSCT00065085060.1	UniProtKB/TrEMBL
	ENSSSCT00070014020.1	UniProtKB/TrEMBL
	ENSSSCT00070014027.1	UniProtKB/TrEMBL
	ENSSSCT00070014036.1	UniProtKB/TrEMBL
InterPro	FAM177	UniProtKB/TrEMBL
NCBI Gene	FAM177A1	ENTREZGENE
PANTHER	PROTEIN FAM177A1	UniProtKB/TrEMBL
	PTHR31206	UniProtKB/TrEMBL
Pfam	FAM177	UniProtKB/TrEMBL
UniProt	A0A287AMV6_PIG	UniProtKB/TrEMBL
	A0A287AWY8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T870	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T948_PIG	UniProtKB/TrEMBL
	A0A4X1T9S1_PIG	UniProtKB/TrEMBL
	A0A5G2QKX1_PIG	UniProtKB/TrEMBL
	A0A8D1KA99	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:87933	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar