B3GNT2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2) - Rat Genome Database

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Gene: B3GNT2 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2) Sus scrofa
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Symbol: B3GNT2
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
RGD ID: 14087843
Description: INVOLVED IN axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH Graves' disease (ortholog); rheumatoid arthritis (ortholog); schizophrenia (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,667,454 - 79,857,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1379,671,393 - 79,704,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,442,753 - 83,475,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
B3GNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,667,454 - 79,857,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1379,671,393 - 79,704,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,442,753 - 83,475,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl262,196,115 - 62,224,731 (+)EnsemblGRCh38hg38GRCh38
GRCh38262,196,115 - 62,224,731 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37262,423,250 - 62,451,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36262,276,766 - 62,305,370 (+)NCBINCBI36hg18NCBI36
Build 34262,334,924 - 62,363,515NCBI
Celera262,267,974 - 62,296,577 (+)NCBI
Cytogenetic Map2p15NCBI
HuRef262,161,876 - 62,190,478 (+)NCBIHuRef
CHM1_1262,353,514 - 62,382,109 (+)NCBICHM1_1
B3gnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,784,739 - 22,810,336 (-)NCBIGRCm39mm39
GRCm39 Ensembl1122,709,738 - 22,810,961 (-)Ensembl
GRCm381122,834,739 - 22,860,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,759,738 - 22,860,961 (-)EnsemblGRCm38mm10GRCm38
MGSCv371122,734,739 - 22,760,336 (-)NCBIGRCm37mm9NCBIm37
MGSCv361122,734,747 - 22,765,435 (-)NCBImm8
Celera1124,970,900 - 24,996,043 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
B3gnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21496,808,473 - 96,833,674 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1496,806,664 - 96,835,273 (-)Ensembl
Rnor_6.014107,592,336 - 107,617,189 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,592,336 - 107,617,161 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014107,652,782 - 107,677,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,499,471 - 103,524,296 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114103,519,717 - 103,542,783 (-)NCBI
Celera1495,796,439 - 95,821,264 (-)NCBICelera
Cytogenetic Map14q22NCBI
B3gnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,859,901 - 21,888,722 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542421,859,901 - 21,888,722 (-)NCBIChiLan1.0ChiLan1.0
B3GNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A63,409,166 - 63,437,801 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,435,289 - 63,436,482 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A62,276,662 - 62,305,286 (+)NCBIMhudiblu_PPA_v0panPan3
B3GNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,170,262 - 62,239,010 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,145,117 - 62,146,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,145,117 - 62,146,310 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,006,771 - 62,127,039 (+)NCBI
ROS_Cfam_1.01063,126,016 - 63,246,466 (+)NCBI
UMICH_Zoey_3.11062,809,530 - 62,929,648 (+)NCBI
UNSW_CanFamBas_1.01063,112,620 - 63,232,848 (+)NCBI
UU_Cfam_GSD_1.01063,409,638 - 63,529,912 (+)NCBI
B3gnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,059,873 - 21,089,048 (-)NCBI
SpeTri2.0NW_0049364917,482,226 - 7,511,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11444,748,997 - 44,776,815 (-)NCBI
ChlSab1.1 Ensembl1444,750,308 - 44,751,501 (-)Ensembl
Vero_WHO_p1.0NW_02366604567,060,099 - 67,087,631 (+)NCBI
B3gnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,202,143 - 11,403,617 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 4 6 2 3 3
Low 2 2 3 1 2 17
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009169   ⟹   ENSSSCP00000008938
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl379,671,388 - 79,688,050 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067264   ⟹   ENSSSCP00000062707
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl379,667,454 - 79,704,025 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079052   ⟹   ENSSSCP00000063258
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl379,671,515 - 79,756,636 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091191   ⟹   ENSSSCP00000062366
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl379,671,517 - 79,857,384 (-)Ensembl
RefSeq Acc Id: XM_003125112   ⟹   XP_003125160
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1379,671,393 - 79,704,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087479   ⟹   XP_020943138
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1379,671,393 - 79,689,678 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003125160 (Get FASTA)   NCBI Sequence Viewer  
  XP_020943138 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003125160   ⟸   XM_003125112
- UniProtKB: F1SIW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943138   ⟸   XM_021087479
- Sequence:
RefSeq Acc Id: ENSSSCP00000008938   ⟸   ENSSSCT00000009169
RefSeq Acc Id: ENSSSCP00000063258   ⟸   ENSSSCT00000079052
RefSeq Acc Id: ENSSSCP00000062366   ⟸   ENSSSCT00000091191
RefSeq Acc Id: ENSSSCP00000062707   ⟸   ENSSSCT00000067264


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070030203 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000008938 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000062366 UniProtKB/TrEMBL
  ENSSSCP00000062707 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000063258 UniProtKB/TrEMBL
  ENSSSCP00070051791 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009169 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000067264 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000079052 UniProtKB/TrEMBL
  ENSSSCT00000091191 UniProtKB/TrEMBL
  ENSSSCT00070060772 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
KEGG Report ssc:100524195 UniProtKB/TrEMBL
NCBI Gene B3GNT2 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A4X1WCS9_PIG UniProtKB/TrEMBL
  F1SIW5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85723 ENTREZGENE