SLC16A11 (solute carrier family 16 member 11) - Rat Genome Database

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Gene: SLC16A11 (solute carrier family 16 member 11) Sus scrofa
Analyze
Symbol: SLC16A11
Name: solute carrier family 16 member 11
RGD ID: 14087235
Description: ENCODES a protein that exhibits pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,439,418 - 52,442,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,434,607 - 52,442,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,696,667 - 54,698,950 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC16A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,439,418 - 52,442,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,434,607 - 52,442,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,696,667 - 54,698,950 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,041,621 - 7,044,092 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,041,621 - 7,044,092 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,944,940 - 6,947,411 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,885,673 - 6,887,966 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,885,672 - 6,887,966NCBI
Celera176,970,509 - 6,972,802 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,838,262 - 6,840,556 (-)NCBIHuRef
CHM1_1176,954,010 - 6,956,303 (-)NCBICHM1_1
T2T-CHM13v2.0176,942,295 - 6,944,766 (-)NCBIT2T-CHM13v2.0
Slc16a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,104,717 - 70,107,239 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,103,578 - 70,107,243 (+)EnsemblGRCm39 Ensembl
GRCm381170,213,695 - 70,216,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,212,752 - 70,216,417 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,027,412 - 70,029,916 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,030,275 - 70,039,098 (+)NCBIMGSCv36mm8
Celera1177,758,367 - 77,760,871 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Slc16a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,427,773 - 55,431,678 (+)NCBIGRCr8
mRatBN7.21054,929,129 - 54,933,021 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,927,725 - 54,942,915 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,608,872 - 59,612,624 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,097,463 - 59,101,223 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,596,592 - 54,600,348 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,822,697 - 56,826,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,822,756 - 56,826,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,567,392 - 56,571,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,051,553 - 57,055,276 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,066,559 - 57,068,898 (+)NCBI
Celera1054,080,849 - 54,084,572 (+)NCBICelera
Cytogenetic Map10q24NCBI
Slc16a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,891,512 - 9,894,192 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,891,909 - 9,894,192 (+)NCBIChiLan1.0ChiLan1.0
SLC16A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,635,210 - 14,639,176 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,601,225 - 16,605,191 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,072,436 - 7,075,242 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,060,678 - 7,062,672 (-)NCBIpanpan1.1PanPan1.1panPan2
SLC16A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,063,227 - 32,065,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,063,291 - 32,065,835 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,201,952 - 32,204,631 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,168,260 - 32,170,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,168,305 - 32,170,240 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,134,301 - 32,136,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,093,524 - 32,096,202 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,270,007 - 32,272,687 (-)NCBIUU_Cfam_GSD_1.0
Slc16a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560246,832,726 - 46,835,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595306,925 - 309,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595306,925 - 309,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,400,197 - 6,403,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,011,991 - 15,014,500 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,578,614 - 9,583,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,579,714 - 9,582,464 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC16A11
133 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019508   ⟹   ENSSSCP00000018990
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,440,113 - 52,442,435 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000027087   ⟹   ENSSSCP00000020507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,440,113 - 52,442,435 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000104844   ⟹   ENSSSCP00000078928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,439,418 - 52,442,435 (-)Ensembl
RefSeq Acc Id: XM_005669186   ⟹   XP_005669243
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005669188   ⟹   XP_005669245
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067802   ⟹   XP_020923461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,427 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067803   ⟹   XP_020923462
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067804   ⟹   XP_020923463
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,433 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067805   ⟹   XP_020923464
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,434,607 - 52,442,467 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005669243   ⟸   XM_005669186
- Peptide Label: isoform X3
- UniProtKB: A0A8D1I758 (UniProtKB/TrEMBL),   F1RFS3 (UniProtKB/TrEMBL),   A0A8D0MI50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923464   ⟸   XM_021067805
- Peptide Label: isoform X3
- UniProtKB: A0A8D1I758 (UniProtKB/TrEMBL),   F1RFS3 (UniProtKB/TrEMBL),   A0A8D0MI50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005669245   ⟸   XM_005669188
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UZ62 (UniProtKB/TrEMBL),   A0A8D1JV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923462   ⟸   XM_021067803
- Peptide Label: isoform X2
- UniProtKB: A0A8D1JV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923463   ⟸   XM_021067804
- Peptide Label: isoform X2
- UniProtKB: A0A8D1JV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923461   ⟸   XM_021067802
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UZ62 (UniProtKB/TrEMBL),   A0A8D1JV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018990   ⟸   ENSSSCT00000019508
RefSeq Acc Id: ENSSSCP00000020507   ⟸   ENSSSCT00000027087
RefSeq Acc Id: ENSSSCP00000078928   ⟸   ENSSSCT00000104844
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017925 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015005026 UniProtKB/TrEMBL
  ENSSSCG00025050891 UniProtKB/TrEMBL
  ENSSSCG00030068430 UniProtKB/TrEMBL
  ENSSSCG00035064581 UniProtKB/TrEMBL
  ENSSSCG00040035770 UniProtKB/TrEMBL
  ENSSSCG00045023095 UniProtKB/TrEMBL
  ENSSSCG00050003648 UniProtKB/TrEMBL
  ENSSSCG00055009535 UniProtKB/TrEMBL
  ENSSSCG00060027814 UniProtKB/TrEMBL
  ENSSSCG00070020498 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019508 ENTREZGENE
  ENSSSCT00000019508.4 UniProtKB/TrEMBL
  ENSSSCT00000027087.3 UniProtKB/TrEMBL
  ENSSSCT00000104844.1 UniProtKB/TrEMBL
  ENSSSCT00015006747.1 UniProtKB/TrEMBL
  ENSSSCT00025069497.1 UniProtKB/TrEMBL
  ENSSSCT00025069746.1 UniProtKB/TrEMBL
  ENSSSCT00030095717.1 UniProtKB/TrEMBL
  ENSSSCT00030095728.1 UniProtKB/TrEMBL
  ENSSSCT00035086921.1 UniProtKB/TrEMBL
  ENSSSCT00035086930.1 UniProtKB/TrEMBL
  ENSSSCT00040048173.1 UniProtKB/TrEMBL
  ENSSSCT00040048224.1 UniProtKB/TrEMBL
  ENSSSCT00040048282.1 UniProtKB/TrEMBL
  ENSSSCT00045039435.1 UniProtKB/TrEMBL
  ENSSSCT00045039494.1 UniProtKB/TrEMBL
  ENSSSCT00045039579.1 UniProtKB/TrEMBL
  ENSSSCT00050004904.1 UniProtKB/TrEMBL
  ENSSSCT00055018579.1 UniProtKB/TrEMBL
  ENSSSCT00055018625.1 UniProtKB/TrEMBL
  ENSSSCT00055018682.1 UniProtKB/TrEMBL
  ENSSSCT00060037631.1 UniProtKB/TrEMBL
  ENSSSCT00060037636.1 UniProtKB/TrEMBL
  ENSSSCT00060037647.1 UniProtKB/TrEMBL
  ENSSSCT00070040739.1 UniProtKB/TrEMBL
  ENSSSCT00070040743.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_MCT_13 UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report ssc:100516827 UniProtKB/TrEMBL
NCBI Gene SLC16A11 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF80 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A4X1UXV3_PIG UniProtKB/TrEMBL
  A0A4X1UZ62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MI50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I758 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JV80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FI78_PIG UniProtKB/TrEMBL
  F1RFS3 ENTREZGENE, UniProtKB/TrEMBL
  I3L8Z6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92939 ENTREZGENE