EBP (EBP cholestenol delta-isomerase)

Gene: EBP (EBP cholestenol delta-isomerase) Sus scrofa

Analyze

Symbol:

EBP

Name:

EBP cholestenol delta-isomerase

RGD ID:

14087127

Description:

ENCODES a protein that exhibits C-8 sterol isomerase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); hemopoiesis (ortholog); sterol biosynthetic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH autistic disorder (ortholog); chondrodysplasia punctata (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase; emopamil binding protein (sterol isomerase)

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,670,633 - 42,678,570 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,670,592 - 42,678,571 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,619,482 - 47,627,465 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

chondrodysplasia punctata (ISO)

congenital disorder of glycosylation type IIm (ISO)

connective tissue disease (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

MEND syndrome (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked chondrodysplasia punctata 1 (ISO)

X-linked chondrodysplasia punctata 2 (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cholesterol biosynthetic process (IBA,IEA,ISO)

cholesterol metabolic process (IEA)

hemopoiesis (IEA,ISO)

ossification involved in bone maturation (IEA)

sterol biosynthetic process (IEA,ISO)

sterol metabolic process (IEA)

Cellular Component

endoplasmic reticulum (IBA,IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

nuclear envelope (IEA)

nuclear membrane (IEA)

Molecular Function

C-8 sterol isomerase activity (IBA,IEA,ISO)

cholestenol delta-isomerase activity (IEA)

identical protein binding (IEA)

isomerase activity (IEA)

protein binding (ISO)

steroid delta-isomerase activity (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

alendronate pharmacodynamics pathway (ISO)

cholesterol biosynthetic pathway (ISO)

cholesterol ester storage disease pathway (ISO)

congenital hemidysplasia with ichthyosiform erythroderma and limb defects pathway (ISO)

desmosterolosis pathway (ISO)

hypercholesterolemia pathway (ISO)

ibandronate pharmacodynamics pathway (ISO)

mevalonic aciduria pathway (ISO)

nitrogenous bisphosphonate pharmacodynamics pathway (ISO)

pamidronate pharmacodynamics pathway (ISO)

risedronate pharmacodynamics pathway (ISO)

Smith-Lemli-Opitz Syndrome pathway (ISO)

statin pharmacodynamics pathway (ISO)

Wolman disease pathway (ISO)

X-linked dominant chondrodysplasia punctata 2 pathway (ISO)

zoledronate pharmacodynamics pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:30032202

Genomics

Comparative Map Data

EBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,670,633 - 42,678,570 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,670,592 - 42,678,571 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,619,482 - 47,627,465 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	48,521,808 - 48,528,716 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	48,521,799 - 48,528,716 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	48,380,196 - 48,387,104 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,265,201 - 48,272,048 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	48,136,510 - 48,143,356	NCBI
Celera	X	53,278,627 - 53,285,567 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,043,290 - 46,050,391 (+)	NCBI		HuRef
CHM1_1	X	48,411,425 - 48,418,366 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	47,930,820 - 47,937,730 (+)	NCBI		T2T-CHM13v2.0

Ebp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	8,051,568 - 8,059,751 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	8,051,568 - 8,059,751 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	8,185,329 - 8,193,512 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	8,185,329 - 8,193,512 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,762,457 - 7,770,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	7,342,290 - 7,350,471 (-)	NCBI		MGSCv36	mm8
Celera	X	3,276,541 - 3,284,699 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.7	NCBI

Ebp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	16,971,372 - 16,977,782 (+)	NCBI		GRCr8
mRatBN7.2	X	14,299,427 - 14,305,826 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,299,448 - 14,305,826 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,112,990 - 19,119,361 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,963,718 - 20,970,092 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	17,228,913 - 17,235,289 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,049,394 - 15,055,782 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,049,462 - 15,055,781 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	15,832,710 - 15,839,093 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,331,199 - 26,337,542 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	26,384,667 - 26,391,010 (+)	NCBI
Celera	X	14,384,941 - 14,391,269 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

Ebp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	92,122 - 98,370 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	92,553 - 98,370 (+)	NCBI	ChiLan1.0	ChiLan1.0

EBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,010,179 - 50,017,556 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,014,011 - 50,020,928 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	40,820,042 - 40,826,957 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	48,683,531 - 48,690,829 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

PORCN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	41,774,857 - 41,779,474 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	41,762,692 - 41,779,476 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,151,069 - 16,155,685 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,014,717 - 42,019,084 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,014,187 - 42,019,315 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	41,897,937 - 41,902,543 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	41,886,230 - 41,890,855 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	41,979,795 - 41,984,410 (+)	NCBI		UU_Cfam_GSD_1.0

Ebp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,268,094 - 34,275,579 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	509,374 - 515,918 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	508,716 - 515,968 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	45,652,398 - 45,660,551 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	45,653,356 - 45,660,291 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,104,334 - 11,112,368 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ebp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	341,129 - 347,717 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	340,843 - 346,560 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in EBP
205 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium						3
Low	10	4	3	5	2	20	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001167646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005657789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005657790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005657791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013990872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB529458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEMK02000113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP325173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01090461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000037292 ⟹ ENSSSCP00000055785

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	X	42,670,633 - 42,678,570 (+)	Ensembl

RefSeq Acc Id:

NM_001167646 ⟹ NP_001161118

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	42,672,059 - 42,678,328 (+)	NCBI

Sequence:

show sequence

ATGACCACCAACGCCAGCCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTG
TGCCTAATGACTGCCCCACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGT
CGTCACTACCTGGCTGTTGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGACTG
TCCTTGTGCTGGTTTGCAGTTTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCTGTCTCT
ACCACGAGGAGCTTCTTGGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAATATGCCAAGGG
AGACAGCCGATACATCCTGAATGATAACTTCACCATCTGCATGGAGACCATCACCGCCTGCCTC
TGGGGACCACTCAGCCTATGGGTGGTGATCGCCTTTCTCCGCCAGCAGCCCCACCGCTTTGTCC
TCCAGCTGGTGGTCTCTGTGGGTCAGATATACGGGGATGTGCTCTATTTCCTGACAGAGCACCG
TGACGGATTCCAGCACGGGGAGCTGGGCCACCCAATCTACTTCTGGTTTTACTTTGTCTTCATG
AATGCTCTGTGGCTGGTGCTGCCCGGAATCCTTGTGCTTGATTCGATAAAGCAACTCAGTCACG
CCCAGAGGATGCTGGACTCCAAAGCCTCCAGAGCCAAGAGCAAGCAAAACTAA

hide sequence

RefSeq Acc Id:

XM_005657789 ⟹ XP_005657846

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	42,670,592 - 42,678,571 (+)	NCBI

Sequence:

show sequence

TACTGGTTGGGAGCAGCACTGGCCGCCTTGCGAGCCTCTCCATTGGCCAACTCCATAAGGCGAG
GAAACCGTGAAGGGATGGGTAAGAATCACGGCTCTCTCGGACCCTGCGAGCTAGCCTAGAGAGA
CCTGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCTGCTGGGTTTTTCCTCTTTCTTTGTTCT
CCTTTCTACATATCCATACACAGCCCACAGCTGTCAGCCGACAAAGACATGACCACCAACGCCA
GCCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTGTGCCTAATGACTGCCC
CACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGTCGTCACTACCTGGCTG
TTGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGACTGTCCTTGTGCTGGTTTG
CAGTCTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCTGTCTCTACCACGAGGAGCTTCT
TGGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAATATGCCAAGGGAGACAGCCGATACATC
CTGAATGATAACTTCACCATCTGCATGGAGACCATCACCGCCTGCCTCTGGGGACCACTCAGCC
TATGGGTGGTGATCGCCTTTCTCCGCCAGCAGCCCCACCGCTTTGTCCTCCAGCTGGTGGTCTC
TGTGGGTCAGATATACGGGGATGTGCTCTATTTCCTGACAGAGCACCGTGACGGATTCCAGCAC
GGGGAGCTGGGCCACCCAATCTACTTCTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCTGG
TGCTGCCCGGAATCCTTGTGCTTGATTCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTGGA
CTCCAAAGCCTCCAGAGCCAAGAGCAAGCAAAACTAATGAGTGATGAACTGGGCTTGAACACTG
GCCGTTGAGGAACTCGCCACCTGTGTCCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCGAA
TTGATCTGTCAAACTCGGGCTGATGGGTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAGCT
AGGTACAGCTGCTGTTCAAGCTACAAGAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTGAA
ATCAAATAAAAGTTCTTGACCCTA

hide sequence

RefSeq Acc Id:

XM_005657790 ⟹ XP_005657847

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	42,670,635 - 42,678,571 (+)	NCBI

Sequence:

show sequence

TGGCCAACTCCATAAGGCGAGGAAACCGTGAAGGGATGGGTAAGAATCACGGCTCTCTCGGACC
CTGCGAGCTAGCCTAGAGAGACCTGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCTGCTGGC
GCCCCAAGCTGGGATCCTGTCCTCCACGTTCCTCTTTCTTGCAGGTTGGCTGCGGGTTGCACTC
TTTCAGGAGGGATCGGGCAATCCCACACACTGAACCTGAGGGTTTTTCCTCTTTCTTTGTTCTC
CTTTCTACATATCCATACACAGCCCACAGCTGTCAGCCGACAAAGACATGACCACCAACGCCAG
CCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTGTGCCTAATGACTGCCCC
ACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGTCGTCACTACCTGGCTGT
TGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGACTGTCCTTGTGCTGGTTTGC
AGTCTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCTGTCTCTACCACGAGGAGCTTCTT
GGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAATATGCCAAGGGAGACAGCCGATACATCC
TGAATGATAACTTCACCATCTGCATGGAGACCATCACCGCCTGCCTCTGGGGACCACTCAGCCT
ATGGGTGGTGATCGCCTTTCTCCGCCAGCAGCCCCACCGCTTTGTCCTCCAGCTGGTGGTCTCT
GTGGGTCAGATATACGGGGATGTGCTCTATTTCCTGACAGAGCACCGTGACGGATTCCAGCACG
GGGAGCTGGGCCACCCAATCTACTTCTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCTGGT
GCTGCCCGGAATCCTTGTGCTTGATTCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTGGAC
TCCAAAGCCTCCAGAGCCAAGAGCAAGCAAAACTAATGAGTGATGAACTGGGCTTGAACACTGG
CCGTTGAGGAACTCGCCACCTGTGTCCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCGAAT
TGATCTGTCAAACTCGGGCTGATGGGTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAGCTA
GGTACAGCTGCTGTTCAAGCTACAAGAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTGAAA
TCAAATAAAAGTTCTTGACCCTA

hide sequence

RefSeq Acc Id:

XM_005657791 ⟹ XP_005657848

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	42,670,615 - 42,678,571 (+)	NCBI

Sequence:

show sequence

CGCCTTGCGAGCCTCTCCATTGGCCAACTCCATAAGGCGAGGAAACCGTGAAGGGATGGGTAAG
AATCACGGCTCTCTCGGACCCTGCGAGCTAGCCTAGAGAGACCTGGGAGGCTGTGGGAGAAGCC
GCCGCAACCGCGCTGCTGGGTTGGCTGCGGGTTGCACTCTTTCAGGAGGGATCGGGCAATCCCA
CACACTGAACCTGAGGGTTTTTCCTCTTTCTTTGTTCTCCTTTCTACATATCCATACACAGCCC
ACAGCTGTCAGCCGACAAAGACATGACCACCAACGCCAGCCCCATGCATCCATACTGGCCTCGG
CACCTGAGGCTGGACAACTTTGTGCCTAATGACTGCCCCACTTGGCATATCCTGGCTGGCCTCT
TCTCCGCCTCTGGAGTCTTAGTCGTCACTACCTGGCTGTTGTCAGGTCGTGCTGCGGTCGTCCC
ACTGAGCACTTGGCGGAGACTGTCCTTGTGCTGGTTTGCAGTCTGTGGGTTCGTTCACTTGGTG
ATTGAGGGCTGGTTCTGTCTCTACCACGAGGAGCTTCTTGGAGACCAAGCCTTCTTATCTCAAC
TCTGGAAGGAATATGCCAAGGGAGACAGCCGATACATCCTGAATGATAACTTCACCATCTGCAT
GGAGACCATCACCGCCTGCCTCTGGGGACCACTCAGCCTATGGGTGGTGATCGCCTTTCTCCGC
CAGCAGCCCCACCGCTTTGTCCTCCAGCTGGTGGTCTCTGTGGGTCAGATATACGGGGATGTGC
TCTATTTCCTGACAGAGCACCGTGACGGATTCCAGCACGGGGAGCTGGGCCACCCAATCTACTT
CTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCTGGTGCTGCCCGGAATCCTTGTGCTTGAT
TCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTGGACTCCAAAGCCTCCAGAGCCAAGAGCA
AGCAAAACTAATGAGTGATGAACTGGGCTTGAACACTGGCCGTTGAGGAACTCGCCACCTGTGT
CCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCGAATTGATCTGTCAAACTCGGGCTGATGG
GTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAGCTAGGTACAGCTGCTGTTCAAGCTACAA
GAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTGAAATCAAATAAAAGTTCTTGACCCTA

hide sequence

RefSeq Acc Id:

XM_013990872 ⟹ XP_013846326

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	42,670,635 - 42,678,571 (+)	NCBI

Sequence:

show sequence

TGGCCAACTCCATAAGGCGAGGAAACCGTGAAGGGATGGGTAAGAATCACGGCTCTCTCGGACC
CTGCGAGCTAGCCTAGAGAGACCTGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCTGCTGGC
GCCCCAAGCTGGGATCCTGTCCTCCACGTTCCTCTTTCTTGCAGGTTTTTCCTCTTTCTTTGTT
CTCCTTTCTACATATCCATACACAGCCCACAGCTGTCAGCCGACAAAGACATGACCACCAACGC
CAGCCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTGTGCCTAATGACTGC
CCCACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGTCGTCACTACCTGGC
TGTTGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGACTGTCCTTGTGCTGGTT
TGCAGTCTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCTGTCTCTACCACGAGGAGCTT
CTTGGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAATATGCCAAGGGAGACAGCCGATACA
TCCTGAATGATAACTTCACCATCTGCATGGAGACCATCACCGCCTGCCTCTGGGGACCACTCAG
CCTATGGGTGGTGATCGCCTTTCTCCGCCAGCAGCCCCACCGCTTTGTCCTCCAGCTGGTGGTC
TCTGTGGGTCAGATATACGGGGATGTGCTCTATTTCCTGACAGAGCACCGTGACGGATTCCAGC
ACGGGGAGCTGGGCCACCCAATCTACTTCTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCT
GGTGCTGCCCGGAATCCTTGTGCTTGATTCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTG
GACTCCAAAGCCTCCAGAGCCAAGAGCAAGCAAAACTAATGAGTGATGAACTGGGCTTGAACAC
TGGCCGTTGAGGAACTCGCCACCTGTGTCCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCG
AATTGATCTGTCAAACTCGGGCTGATGGGTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAG
CTAGGTACAGCTGCTGTTCAAGCTACAAGAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTG
AAATCAAATAAAAGTTCTTGACCCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001161118	(Get FASTA)	NCBI Sequence Viewer
	XP_005657846	(Get FASTA)	NCBI Sequence Viewer
	XP_005657847	(Get FASTA)	NCBI Sequence Viewer
	XP_005657848	(Get FASTA)	NCBI Sequence Viewer
	XP_013846326	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAI47783	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000055785
	ENSSSCP00000055785.1
	ENSSSCP00005044994.1
	ENSSSCP00005045006.1
	ENSSSCP00015037050.1
	ENSSSCP00030035516.1
	ENSSSCP00035040894.1
	ENSSSCP00045030843.1
	ENSSSCP00055001608.1
	ENSSSCP00060048862.1
	ENSSSCP00065048670.1
	ENSSSCP00070041881.1
	ENSSSCP00070041883.1

RefSeq Acc Id:	XP_005657846 ⟸ XM_005657789
- Peptide Label:	isoform X1
- UniProtKB:	D0G6S5 (UniProtKB/TrEMBL), A0A4X1VJ04 (UniProtKB/TrEMBL), A0A8D0UAL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLSTWRRL SLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACL WGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFM NALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN hide sequence

RefSeq Acc Id:	XP_005657848 ⟸ XM_005657791
- Peptide Label:	isoform X1
- UniProtKB:	D0G6S5 (UniProtKB/TrEMBL), A0A4X1VJ04 (UniProtKB/TrEMBL), A0A8D0UAL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLSTWRRL SLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACL WGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFM NALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN hide sequence

RefSeq Acc Id:	XP_005657847 ⟸ XM_005657790
- Peptide Label:	isoform X1
- UniProtKB:	D0G6S5 (UniProtKB/TrEMBL), A0A4X1VJ04 (UniProtKB/TrEMBL), A0A8D0UAL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLSTWRRL SLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACL WGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFM NALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN hide sequence

RefSeq Acc Id:	XP_013846326 ⟸ XM_013990872
- Peptide Label:	isoform X1
- UniProtKB:	D0G6S5 (UniProtKB/TrEMBL), A0A4X1VJ04 (UniProtKB/TrEMBL), A0A8D0UAL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLSTWRRL SLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACL WGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFM NALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN hide sequence

RefSeq Acc Id:

NP_001161118 ⟸ NM_001167646

- UniProtKB:

D0G6S5 (UniProtKB/TrEMBL), A0A4X1VJ04 (UniProtKB/TrEMBL), A0A8D0UAL8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTNASPMHPYWPRHLRLDNFVPNDCPTWHILAGLFSASGVLVVTTWLLSGRAAVVPLSTWRRL
SLCWFAVCGFVHLVIEGWFCLYHEELLGDQAFLSQLWKEYAKGDSRYILNDNFTICMETITACL
WGPLSLWVVIAFLRQQPHRFVLQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPIYFWFYFVFM
NALWLVLPGILVLDSIKQLSHAQRMLDSKASRAKSKQN

hide sequence

RefSeq Acc Id:

ENSSSCP00000055785 ⟸ ENSSSCT00000037292

Protein Domains

EXPERA

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000032768	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005044732	UniProtKB/TrEMBL
	ENSSSCG00015067557	UniProtKB/TrEMBL
	ENSSSCG00030055789	UniProtKB/TrEMBL
	ENSSSCG00035071708	UniProtKB/TrEMBL
	ENSSSCG00045026138	UniProtKB/TrEMBL
	ENSSSCG00055001207	UniProtKB/TrEMBL
	ENSSSCG00060078954	UniProtKB/TrEMBL
	ENSSSCG00065078446	UniProtKB/TrEMBL
	ENSSSCG00070024825	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000037292	ENTREZGENE
	ENSSSCT00000037292.2	UniProtKB/TrEMBL
	ENSSSCT00005072049.1	UniProtKB/TrEMBL
	ENSSSCT00005072064.1	UniProtKB/TrEMBL
	ENSSSCT00015090573.1	UniProtKB/TrEMBL
	ENSSSCT00030077740.1	UniProtKB/TrEMBL
	ENSSSCT00035096986.1	UniProtKB/TrEMBL
	ENSSSCT00045044462.1	UniProtKB/TrEMBL
	ENSSSCT00055002140.1	UniProtKB/TrEMBL
	ENSSSCT00060109252.1	UniProtKB/TrEMBL
	ENSSSCT00065108728.1	UniProtKB/TrEMBL
	ENSSSCT00070049603.1	UniProtKB/TrEMBL
	ENSSSCT00070049605.1	UniProtKB/TrEMBL
InterPro	EBP	UniProtKB/TrEMBL
	EXPERA	UniProtKB/TrEMBL
KEGG Report	ssc:100312968	UniProtKB/TrEMBL
NCBI Gene	EBP	ENTREZGENE
PANTHER	3-BETA-HYDROXYSTEROID-DELTA(8),DELTA(7)-ISOMERASE	UniProtKB/TrEMBL
	PTHR14207	UniProtKB/TrEMBL
Pfam	EBP	UniProtKB/TrEMBL
PROSITE	EXPERA	UniProtKB/TrEMBL
UniProt	A0A4X1VJ04	ENTREZGENE
	A0A8D0UAL8	ENTREZGENE, UniProtKB/TrEMBL
	D0G6S5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1VJ04	UniProtKB/TrEMBL
VGNC ID	VGNC:109576	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB