H2BC15 (H2B clustered histone 15) - Rat Genome Database

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Gene: H2BC15 (H2B clustered histone 15) Sus scrofa
Analyze
Symbol: H2BC15
Name: H2B clustered histone 15
RGD ID: 14086608
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response in mucosa (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1-N; LOC100621915
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,110,568 - 23,111,082 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,110,568 - 23,111,082 (+)NCBISscrofa10.2Sscrofa10.2susScr3
H2BC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,838,569 - 27,839,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,838,545 - 27,855,709 (+)EnsemblGRCh38hg38GRCh38
GRCh37627,806,347 - 27,806,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,914,343 - 27,914,873 (+)NCBINCBI36Build 36hg18NCBI36
Build 34627,914,418 - 27,914,867NCBI
Celera629,412,400 - 29,412,930 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,614,094 - 27,614,542 (+)NCBIHuRef
CHM1_1627,808,587 - 27,809,035 (+)NCBICHM1_1
T2T-CHM13v2.0627,708,242 - 27,708,783 (+)NCBIT2T-CHM13v2.0
H2bc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,938,246 - 21,938,723 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,938,293 - 21,938,673 (+)EnsemblGRCm39 Ensembl
GRCm381321,754,076 - 21,754,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,754,123 - 21,754,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371321,845,992 - 21,846,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,761,588 - 21,761,968 (+)NCBIMGSCv36mm8
Celera1322,029,612 - 22,029,992 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.95NCBI
LOC100985638
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,481,228 - 42,502,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,483,019 - 38,503,445 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,667,886 - 27,685,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,342,891 - 28,356,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,343,094 - 28,370,373 (+)Ensemblpanpan1.1panPan2
LOC478743
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3523,971,560 - 23,972,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl3524,178,247 - 24,181,892 (-)EnsemblROS_Cfam_1.0 Ensembl

Variants

.
Variants in H2BC15
164 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013977505   ⟹   XP_013832959
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013832959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000073852
  ENSSSCP00000073852.2
  ENSSSCP00070042093.1
Reference Protein Sequences
RefSeq Acc Id: XP_013832959   ⟸   XM_013977505
- UniProtKB: A0A5G2RG11 (UniProtKB/TrEMBL),   A0A4X1VM98 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000044013 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024955 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000075485 ENTREZGENE
  ENSSSCT00000075485.2 UniProtKB/TrEMBL
  ENSSSCT00070049845.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report ssc:100621915 UniProtKB/TrEMBL
NCBI Gene LOC100621915 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  HISTONE H2B TYPE 2-C-RELATED UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A480RS85_PIG UniProtKB/TrEMBL
  A0A4X1VM98 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RG11 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109823 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC15  H2B clustered histone 15  LOC100621915  histone H2B type 1-N  Symbol and/or name change 19259463 PROVISIONAL