SVIP (small VCP interacting protein) - Rat Genome Database

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Gene: SVIP (small VCP interacting protein) Sus scrofa
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Symbol: SVIP
Name: small VCP interacting protein
RGD ID: 14086034
Description: ENCODES a protein that exhibits ATPase binding (ortholog); protein self-association (ortholog); INVOLVED IN negative regulation of ER-associated ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein-containing complex assembly (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN anchored component of membrane (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: small VCP/p97-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1236,703,757 - 36,714,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2239,934,313 - 39,958,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SVIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1236,703,757 - 36,714,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2239,934,313 - 39,958,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SVIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1122,813,799 - 22,830,299 (-)EnsemblGRCh38hg38GRCh38
GRCh381122,812,429 - 22,829,865 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371122,840,473 - 22,851,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,800,174 - 22,807,958 (-)NCBINCBI36hg18NCBI36
Celera1122,977,457 - 22,985,238 (-)NCBI
Cytogenetic Map11p14.3NCBI
HuRef1122,527,002 - 22,534,781 (-)NCBIHuRef
CHM1_11122,842,910 - 22,850,689 (-)NCBICHM1_1
Svip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,646,909 - 51,655,766 (-)NCBIGRCm39mm39
GRCm39 Ensembl751,646,919 - 51,655,766 (-)Ensembl
GRCm38751,997,161 - 52,006,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,997,171 - 52,006,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37759,252,531 - 59,261,388 (-)NCBIGRCm37mm9NCBIm37
Celera749,368,103 - 49,376,978 (-)NCBICelera
Cytogenetic Map7B4NCBI
Svip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21101,587,128 - 101,592,818 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1101,587,128 - 101,593,116 (-)Ensembl
Rnor_6.01107,368,117 - 107,373,807 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,368,117 - 107,373,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,409,749 - 108,415,439 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,803,004 - 101,808,688 (-)NCBIRGSC3.4rn4RGSC3.4
Celera195,753,801 - 95,759,491 (-)NCBICelera
Cytogenetic Map1q22NCBI
Svip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554763,231,789 - 3,236,602 (-)NCBIChiLan1.0ChiLan1.0
SVIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11122,726,818 - 22,744,558 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,735,361 - 22,744,558 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01122,828,321 - 22,837,536 (-)NCBIMhudiblu_PPA_v0panPan3
SVIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,408,467 - 44,418,160 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,408,474 - 44,415,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2143,883,618 - 43,892,770 (-)NCBI
ROS_Cfam_1.02145,527,466 - 45,536,601 (-)NCBI
UMICH_Zoey_3.12144,525,444 - 44,534,597 (-)NCBI
UNSW_CanFamBas_1.02144,697,938 - 44,707,116 (-)NCBI
UU_Cfam_GSD_1.02145,091,481 - 45,100,671 (-)NCBI
LOC101964419
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,467,407 - 40,473,548 (+)NCBI
SpeTri2.0NW_0049366543,452,781 - 3,459,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103238741
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,185,115 - 42,193,121 (+)NCBI
ChlSab1.1 Ensembl142,185,121 - 42,195,006 (+)Ensembl
Vero_WHO_p1.0NW_023666038139,489,520 - 139,499,156 (+)NCBI
Svip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476613,724,052 - 13,751,774 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003353923   ⟹   XP_003353971
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1236,703,757 - 36,714,018 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003353971 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003353971   ⟸   XM_003353923
- UniProtKB: A0A287B4F7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00070005455 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00070008468 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00070010323 UniProtKB/TrEMBL
InterPro SVIP UniProtKB/TrEMBL
KEGG Report ssc:100625679 UniProtKB/TrEMBL
NCBI Gene SVIP ENTREZGENE
PANTHER PTHR35269 UniProtKB/TrEMBL
Pfam SVIP UniProtKB/TrEMBL
UniProt A0A287B4F7 ENTREZGENE
  A0A4X1T1B6_PIG UniProtKB/TrEMBL