EGFL6 (EGF like domain multiple 6) - Rat Genome Database

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Gene: EGFL6 (EGF like domain multiple 6) Sus scrofa
Analyze
Symbol: EGFL6
Name: EGF like domain multiple 6
RGD ID: 14085480
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); genetic disease (ortholog); FOUND IN basement membrane (inferred); extracellular matrix (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epidermal growth factor-like protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,217,924 - 10,283,810 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,218,108 - 10,284,152 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,171,935 - 11,237,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
EGFL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,217,924 - 10,283,810 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,218,108 - 10,284,152 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,171,935 - 11,237,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EGFL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,569,601 - 13,633,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,569,601 - 13,633,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37X13,587,720 - 13,651,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,497,662 - 13,561,615 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X13,347,397 - 13,411,350NCBI
CeleraX17,704,800 - 17,768,780 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,346,706 - 11,404,147 (+)NCBIHuRef
CHM1_1X13,618,522 - 13,682,553 (+)NCBICHM1_1
T2T-CHM13v2.0X13,151,011 - 13,214,962 (+)NCBIT2T-CHM13v2.0
Egfl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,306,003 - 165,368,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,306,003 - 165,368,716 (-)EnsemblGRCm39 Ensembl
GRCm38X166,523,007 - 166,585,716 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,523,007 - 166,585,720 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X162,960,939 - 163,023,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,867,112 - 161,929,821 (-)NCBIMGSCv36mm8
CeleraX149,703,700 - 149,765,223 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.66NCBI
Egfl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,515,752 - 31,573,699 (+)NCBIGRCr8
mRatBN7.2X27,884,087 - 27,942,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX27,884,125 - 27,942,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX28,918,085 - 28,976,353 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,353,819 - 32,411,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,532,727 - 28,590,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,430,789 - 29,488,737 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,430,831 - 29,488,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,823,750 - 29,881,382 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,568,644 - 48,626,802 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX28,256,591 - 28,314,648 (+)NCBICelera
Cytogenetic MapXq13NCBI
Egfl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,556,610 - 4,616,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,557,007 - 4,616,095 (-)NCBIChiLan1.0ChiLan1.0
EGFL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,348,589 - 15,413,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,352,255 - 15,416,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,177,141 - 6,240,969 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,465,614 - 13,529,394 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,465,605 - 13,529,474 (+)Ensemblpanpan1.1panPan2
EGFL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X9,944,648 - 10,062,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX9,995,846 - 10,062,266 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX9,816,026 - 10,037,235 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X9,811,918 - 10,020,620 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX9,955,601 - 10,020,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X9,802,862 - 10,089,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X9,836,276 - 10,080,587 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,020,615 - 10,106,745 (+)NCBIUU_Cfam_GSD_1.0
Egfl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,156,546 - 3,214,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364703,156,518 - 3,215,990 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364703,156,593 - 3,215,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EGFL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,051,172 - 12,116,860 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,052,518 - 12,116,845 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605613,881,736 - 13,946,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Egfl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624882513,227 - 575,126 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624882513,105 - 575,126 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EGFL6
1677 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system
High
Medium
Low 1 1 9 1
Below cutoff 3 1 2 1 2 13 1

Sequence


RefSeq Acc Id: ENSSSCT00000013260   ⟹   ENSSSCP00000012904
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX10,217,924 - 10,283,810 (+)Ensembl
RefSeq Acc Id: XM_005673431   ⟹   XP_005673488
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X10,218,108 - 10,284,152 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005673488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012904
  ENSSSCP00000012904.4
  ENSSSCP00025034954.1
  ENSSSCP00045035377.1
  ENSSSCP00070031609.1
RefSeq Acc Id: XP_005673488   ⟸   XM_005673431
- UniProtKB: F1SRI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000012904   ⟸   ENSSSCT00000013260
Protein Domains
EGF-like   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025058714 UniProtKB/TrEMBL
  ENSSSCG00045029777 UniProtKB/TrEMBL
  ENSSSCG00070019129 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013260 ENTREZGENE
  ENSSSCT00000013260.5 UniProtKB/TrEMBL
  ENSSSCT00025080423.1 UniProtKB/TrEMBL
  ENSSSCT00045050843.1 UniProtKB/TrEMBL
  ENSSSCT00070037789.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
KEGG Report ssc:100153585 UniProtKB/TrEMBL
NCBI Gene EGFL6 ENTREZGENE
PANTHER PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR24050:SF24 UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A4X1USN2_PIG UniProtKB/TrEMBL
  F1SRI3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87583 ENTREZGENE