NMNAT1 (nicotinamide nucleotide adenylyltransferase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NMNAT1 (nicotinamide nucleotide adenylyltransferase 1) Sus scrofa
Analyze
Symbol: NMNAT1
Name: nicotinamide nucleotide adenylyltransferase 1
RGD ID: 14084858
Description: ENCODES a protein that exhibits adenylyltransferase activity (inferred); ATP binding (inferred); catalytic activity (inferred); INVOLVED IN negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN de novo nicotinamide adenine dinucleotide biosynthetic pathway; nicotinamide adenine dinucleotide biosynthesis, the salvage pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); cone dystrophy (ortholog); FOUND IN chromatin (inferred); nuclear body (inferred); nucleoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,272,014 - 70,310,707 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,271,296 - 70,307,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,326,981 - 64,334,151 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NMNAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,272,014 - 70,310,707 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,271,296 - 70,307,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,326,981 - 64,334,151 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NMNAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,942,923 - 9,996,892 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,943,428 - 9,985,501 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,002,981 - 10,045,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,926,073 - 9,968,143 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419,937,752 - 9,977,979NCBI
Celera19,114,519 - 9,156,598 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,158,939 - 9,200,537 (+)NCBIHuRef
CHM1_119,992,303 - 10,034,914 (+)NCBICHM1_1
T2T-CHM13v2.019,485,828 - 9,539,839 (+)NCBIT2T-CHM13v2.0
Nmnat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,552,026 - 149,569,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,552,029 - 149,569,659 (-)EnsemblGRCm39 Ensembl
GRCm384149,467,569 - 149,485,210 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,467,572 - 149,485,202 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,842,896 - 148,859,251 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,312,587 - 148,328,942 (-)NCBIMGSCv36mm8
Celera4151,732,264 - 151,748,554 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.47NCBI
Nmnat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,193,301 - 165,211,213 (-)NCBIGRCr8
mRatBN7.25159,910,242 - 159,928,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,910,242 - 159,928,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,626,872 - 162,644,786 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,446,857 - 164,464,893 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,403,219 - 164,421,255 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,409,460 - 166,430,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,409,461 - 166,430,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,057,406 - 170,076,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,548,899 - 166,567,266 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,560,236 - 166,569,740 (-)NCBI
Celera5158,179,840 - 158,197,813 (-)NCBICelera
Cytogenetic Map5q36NCBI
Nmnat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,637,794 - 3,655,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,637,794 - 3,655,744 (-)NCBIChiLan1.0ChiLan1.0
NMNAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,229,238 - 218,276,060 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,879,808 - 216,921,711 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,712,798 - 8,753,027 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,942,491 - 9,982,369 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,942,491 - 9,982,364 (+)Ensemblpanpan1.1panPan2
NMNAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,122,379 - 63,152,078 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,122,498 - 63,151,661 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,137,192 - 63,167,170 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,348,554 - 63,379,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,349,103 - 63,379,006 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,369,458 - 63,399,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,209,144 - 63,239,504 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,612,791 - 63,643,286 (+)NCBIUU_Cfam_GSD_1.0
Nmnat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,377,149 - 33,406,723 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,870,031 - 3,891,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,862,234 - 3,891,849 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NMNAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,790,836 - 121,797,043 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605425,709,816 - 25,751,201 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmnat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,573,498 - 2,580,095 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,575,476 - 2,591,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NMNAT1
841 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000003772   ⟹   ENSSSCP00000003685
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl670,272,014 - 70,310,707 (+)Ensembl
RefSeq Acc Id: XM_021095304   ⟹   XP_020950963
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1670,271,907 - 70,307,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095305   ⟹   XP_020950964
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1670,271,727 - 70,307,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095306   ⟹   XP_020950965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1670,271,296 - 70,307,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095307   ⟹   XP_020950966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1670,272,248 - 70,307,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095308   ⟹   XP_020950967
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1670,289,199 - 70,305,624 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950965   ⟸   XM_021095306
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W9N9 (UniProtKB/TrEMBL),   I3LKJ4 (UniProtKB/TrEMBL),   F1RIG0 (UniProtKB/TrEMBL),   A0A8D1C7A4 (UniProtKB/TrEMBL),   A0A8D1TB62 (UniProtKB/TrEMBL),   A0A8D1GF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950964   ⟸   XM_021095305
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W9N9 (UniProtKB/TrEMBL),   I3LKJ4 (UniProtKB/TrEMBL),   F1RIG0 (UniProtKB/TrEMBL),   A0A8D1C7A4 (UniProtKB/TrEMBL),   A0A8D1TB62 (UniProtKB/TrEMBL),   A0A8D1GF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950963   ⟸   XM_021095304
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W9N9 (UniProtKB/TrEMBL),   I3LKJ4 (UniProtKB/TrEMBL),   F1RIG0 (UniProtKB/TrEMBL),   A0A8D1C7A4 (UniProtKB/TrEMBL),   A0A8D1TB62 (UniProtKB/TrEMBL),   A0A8D1GF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950966   ⟸   XM_021095307
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W9N9 (UniProtKB/TrEMBL),   I3LKJ4 (UniProtKB/TrEMBL),   F1RIG0 (UniProtKB/TrEMBL),   A0A8D1C7A4 (UniProtKB/TrEMBL),   A0A8D1TB62 (UniProtKB/TrEMBL),   A0A8D1GF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950967   ⟸   XM_021095308
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSSCP00000003685   ⟸   ENSSSCT00000003772
Protein Domains
Cytidyltransferase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003400 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015032019 UniProtKB/TrEMBL
  ENSSSCG00025069602 UniProtKB/TrEMBL
  ENSSSCG00030037165 UniProtKB/TrEMBL
  ENSSSCG00035062130 UniProtKB/TrEMBL
  ENSSSCG00040050766 UniProtKB/TrEMBL
  ENSSSCG00045001410 UniProtKB/TrEMBL
  ENSSSCG00050026196 UniProtKB/TrEMBL
  ENSSSCG00055028202 UniProtKB/TrEMBL
  ENSSSCG00060046222 UniProtKB/TrEMBL
  ENSSSCG00065045624 UniProtKB/TrEMBL
  ENSSSCG00070029508 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003772 ENTREZGENE
  ENSSSCT00000003772.5 UniProtKB/TrEMBL
  ENSSSCT00015042354.1 UniProtKB/TrEMBL
  ENSSSCT00025095594.1 UniProtKB/TrEMBL
  ENSSSCT00030051684.1 UniProtKB/TrEMBL
  ENSSSCT00035083515.1 UniProtKB/TrEMBL
  ENSSSCT00040068512.1 UniProtKB/TrEMBL
  ENSSSCT00045002243.1 UniProtKB/TrEMBL
  ENSSSCT00050035248.1 UniProtKB/TrEMBL
  ENSSSCT00055055865.1 UniProtKB/TrEMBL
  ENSSSCT00060062748.1 UniProtKB/TrEMBL
  ENSSSCT00065062430.1 UniProtKB/TrEMBL
  ENSSSCT00065062431.1 UniProtKB/TrEMBL
  ENSSSCT00065062436.1 UniProtKB/TrEMBL
  ENSSSCT00070059296.1 UniProtKB/TrEMBL
  ENSSSCT00070059297.1 UniProtKB/TrEMBL
  ENSSSCT00070059298.1 UniProtKB/TrEMBL
  ENSSSCT00070059299.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/TrEMBL
InterPro Cyt_trans-like UniProtKB/TrEMBL
  Euk_NMN_adenylyltrnsfrase UniProtKB/TrEMBL
  NadD/NMNAT UniProtKB/TrEMBL
  NMNAT_euk UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
NCBI Gene NMNAT1 ENTREZGENE
PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE UniProtKB/TrEMBL
  NICOTINAMIDE_NICOTINIC ACID MONONUCLEOTIDE ADENYLYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam CTP_transf_like UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/TrEMBL
UniProt A0A4X1W2L9_PIG UniProtKB/TrEMBL
  A0A4X1W9N9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C7A4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GF17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TB62 ENTREZGENE, UniProtKB/TrEMBL
  F1RIG0 ENTREZGENE, UniProtKB/TrEMBL
  I3LKJ4 ENTREZGENE
UniProt Secondary I3LKJ4 UniProtKB/TrEMBL
VGNC ID VGNC:90797 ENTREZGENE