C15H2orf88 (chromosome 15 C2orf88 homolog) - Rat Genome Database

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Gene: C15H2orf88 (chromosome 15 C2orf88 homolog) Sus scrofa
Analyze
Symbol: C15H2orf88 (Ensembl: C2orf88)
Name: chromosome 15 C2orf88 homolog
RGD ID: 14084448
Description: ENCODES a protein that exhibits protein kinase A regulatory subunit binding (inferred); ASSOCIATED WITH immunodeficiency 31B (ortholog); juvenile rheumatoid arthritis (ortholog); myostatin-related muscle hypertrophy (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small membrane A-kinase anchor protein; UPF0733 protein C2orf88 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,478,021 - 94,791,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,628,283 - 94,794,114 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,739,108 - 105,827,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C15H2orf88
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,478,021 - 94,791,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,628,283 - 94,794,114 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,739,108 - 105,827,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C2orf88
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382189,879,562 - 190,203,484 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2189,879,609 - 190,203,484 (+)EnsemblGRCh38hg38GRCh38
GRCh372191,002,503 - 191,068,210 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362190,710,731 - 190,776,455 (+)NCBINCBI36Build 36hg18NCBI36
Celera2184,597,431 - 184,663,252 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2182,862,271 - 182,928,103 (+)NCBIHuRef
CHM1_12191,008,368 - 191,074,067 (+)NCBICHM1_1
T2T-CHM13v2.02190,627,278 - 190,693,074 (+)NCBIT2T-CHM13v2.0
1700019D03Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,961,483 - 53,031,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl152,961,483 - 53,059,338 (-)EnsemblGRCm39 Ensembl
GRCm38152,922,324 - 52,992,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,922,324 - 53,020,179 (-)EnsemblGRCm38mm10GRCm38
MGSCv37152,981,971 - 53,009,684 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36152,869,672 - 52,897,385 (-)NCBIMGSCv36mm8
Celera153,465,538 - 53,492,651 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
C9h2orf88
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8956,037,234 - 56,076,793 (+)NCBIGRCr8
mRatBN7.2948,539,140 - 48,584,882 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,568,409 - 48,584,831 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx957,086,832 - 57,126,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0962,209,667 - 62,249,303 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,505,647 - 60,545,289 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,395,684 - 53,464,930 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,440,272 - 53,440,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0953,068,168 - 53,131,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,558,745 - 45,559,487 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera946,208,942 - 46,278,615 (+)NCBICelera
Cytogenetic Map9q22NCBI
LOC102003714
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554038,797,416 - 8,847,431 (-)NCBIChiLan1.0ChiLan1.0
C13H2orf88
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,832,422 - 92,895,809 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,847,406 - 92,910,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,446,455 - 77,509,809 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,365,347 - 195,428,651 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,424,996 - 195,425,283 (+)Ensemblpanpan1.1panPan2
C37H2orf88
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.137611,530 - 840,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl37836,416 - 836,703 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,584,925 - 1,796,102 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.037505,545 - 734,425 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.137515,749 - 744,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037484,017 - 712,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.037512,219 - 741,098 (+)NCBIUU_Cfam_GSD_1.0
CUNH2orf88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303148,902,554 - 148,951,170 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365067,883,823 - 7,903,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH2orf88
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11075,573,749 - 75,710,761 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1075,707,093 - 75,707,380 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040123,758,782 - 123,778,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH2orf88
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248545,770,852 - 5,846,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C15H2orf88
4219 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 1 5 14 12 23 3 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000043974   ⟹   ENSSSCP00000041323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,478,046 - 94,791,775 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000076988   ⟹   ENSSSCP00000065466
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,478,046 - 94,790,570 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078171   ⟹   ENSSSCP00000060369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,478,021 - 94,791,775 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000082847   ⟹   ENSSSCP00000074404
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,478,049 - 94,791,775 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000083976   ⟹   ENSSSCP00000067349
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,764,432 - 94,791,775 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000086417   ⟹   ENSSSCP00000066094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1594,478,021 - 94,790,626 (+)Ensembl
RefSeq Acc Id: XM_003133545   ⟹   XP_003133593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,764,467 - 94,794,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076261   ⟹   XP_020931920
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,628,283 - 94,794,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021076262   ⟹   XP_020931921
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11594,764,467 - 94,794,114 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020931920   ⟸   XM_021076261
- UniProtKB: A0A4X1TIH9 (UniProtKB/TrEMBL),   A0A5G2QLM0 (UniProtKB/TrEMBL),   A0A287ABE0 (UniProtKB/TrEMBL),   A0A8D0SAJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931921   ⟸   XM_021076262
- UniProtKB: A0A4X1TIH9 (UniProtKB/TrEMBL),   A0A5G2QLM0 (UniProtKB/TrEMBL),   A0A287ABE0 (UniProtKB/TrEMBL),   A0A8D0SAJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003133593   ⟸   XM_003133545
- UniProtKB: A0A287ABE0 (UniProtKB/TrEMBL),   A0A4X1TIH9 (UniProtKB/TrEMBL),   A0A5G2QLM0 (UniProtKB/TrEMBL),   A0A8D0SAJ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000067349   ⟸   ENSSSCT00000083976
Ensembl Acc Id: ENSSSCP00000060369   ⟸   ENSSSCT00000078171
Ensembl Acc Id: ENSSSCP00000066094   ⟸   ENSSSCT00000086417
Ensembl Acc Id: ENSSSCP00000041323   ⟸   ENSSSCT00000043974
Ensembl Acc Id: ENSSSCP00000074404   ⟸   ENSSSCT00000082847
Ensembl Acc Id: ENSSSCP00000065466   ⟸   ENSSSCT00000076988


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033941 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015080106 UniProtKB/TrEMBL
  ENSSSCG00025049327 UniProtKB/TrEMBL
  ENSSSCG00030046784 UniProtKB/TrEMBL
  ENSSSCG00035017809 UniProtKB/TrEMBL
  ENSSSCG00040043333 UniProtKB/TrEMBL
  ENSSSCG00045017624 UniProtKB/TrEMBL
  ENSSSCG00050035088 UniProtKB/TrEMBL
  ENSSSCG00055024775 UniProtKB/TrEMBL
  ENSSSCG00060078543 UniProtKB/TrEMBL
  ENSSSCG00065038457 UniProtKB/TrEMBL
  ENSSSCG00070009323 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043974.3 UniProtKB/TrEMBL
  ENSSSCT00000076988.2 UniProtKB/TrEMBL
  ENSSSCT00000078171 ENTREZGENE
  ENSSSCT00000078171.2 UniProtKB/TrEMBL
  ENSSSCT00000082847.2 UniProtKB/TrEMBL
  ENSSSCT00000083976 ENTREZGENE
  ENSSSCT00000083976.2 UniProtKB/TrEMBL
  ENSSSCT00000086417.2 UniProtKB/TrEMBL
  ENSSSCT00015108849.1 UniProtKB/TrEMBL
  ENSSSCT00025067189.1 UniProtKB/TrEMBL
  ENSSSCT00025067322.1 UniProtKB/TrEMBL
  ENSSSCT00025067422.1 UniProtKB/TrEMBL
  ENSSSCT00025067476.1 UniProtKB/TrEMBL
  ENSSSCT00025067543.1 UniProtKB/TrEMBL
  ENSSSCT00025067576.1 UniProtKB/TrEMBL
  ENSSSCT00025067727.1 UniProtKB/TrEMBL
  ENSSSCT00030065231.1 UniProtKB/TrEMBL
  ENSSSCT00035022928.1 UniProtKB/TrEMBL
  ENSSSCT00040058015.1 UniProtKB/TrEMBL
  ENSSSCT00045030020.1 UniProtKB/TrEMBL
  ENSSSCT00050047158.1 UniProtKB/TrEMBL
  ENSSSCT00055048829.1 UniProtKB/TrEMBL
  ENSSSCT00060108522.1 UniProtKB/TrEMBL
  ENSSSCT00065052575.1 UniProtKB/TrEMBL
  ENSSSCT00070018090.1 UniProtKB/TrEMBL
InterPro Small_membr_AKAP UniProtKB/TrEMBL
KEGG Report ssc:106506310 UniProtKB/TrEMBL
NCBI Gene C15H2orf88 ENTREZGENE
PANTHER PTHR36471 UniProtKB/TrEMBL
  SMALL MEMBRANE A-KINASE ANCHOR PROTEIN UniProtKB/TrEMBL
Pfam SmAKAP UniProtKB/TrEMBL
UniProt A0A287ABE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TIH9 ENTREZGENE
  A0A5G2QLM0 ENTREZGENE
  A0A8D0SAJ7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1TIH9 UniProtKB/TrEMBL
  A0A5G2QLM0 UniProtKB/TrEMBL
VGNC ID VGNC:96170 ENTREZGENE