CPEB1 (cytoplasmic polyadenylation element binding protein 1) - Rat Genome Database

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Gene: CPEB1 (cytoplasmic polyadenylation element binding protein 1) Sus scrofa
Analyze
Symbol: CPEB1
Name: cytoplasmic polyadenylation element binding protein 1
RGD ID: 14083864
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN positive regulation of meiotic cell cycle process involved in oocyte maturation; positive regulation of translation; cellular response to amino acid stimulus (ortholog); ASSOCIATED WITH amenorrhea (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); Bloom syndrome (ortholog); FOUND IN centrosome (ortholog); glutamatergic synapse (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytoplasmic polyadenylation element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,304,472 - 52,383,732 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,329,054 - 52,382,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,815,438 - 57,867,976 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:20662813   PMID:24983972  


Genomics

Comparative Map Data
CPEB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,304,472 - 52,383,732 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,329,054 - 52,382,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2757,815,438 - 57,867,976 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381582,543,201 - 82,648,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1582,543,201 - 82,648,861 (-)EnsemblGRCh38hg38GRCh38
GRCh371583,211,951 - 83,317,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361581,009,006 - 81,113,783 (-)NCBINCBI36Build 36hg18NCBI36
Build 341581,009,640 - 81,094,275NCBI
Celera1561,263,397 - 61,367,744 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1559,482,509 - 59,586,909 (-)NCBIHuRef
CHM1_11582,953,574 - 83,058,345 (-)NCBICHM1_1
T2T-CHM13v2.01580,407,439 - 80,513,020 (-)NCBIT2T-CHM13v2.0
Cpeb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,996,774 - 81,107,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,996,774 - 81,105,213 (-)EnsemblGRCm39 Ensembl
GRCm38781,347,026 - 81,458,001 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl781,347,026 - 81,455,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv37788,492,329 - 88,599,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36781,220,956 - 81,328,189 (-)NCBIMGSCv36mm8
Celera778,752,617 - 78,860,054 (-)NCBICelera
Cytogenetic Map7D3NCBI
Cpeb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21135,300,048 - 135,407,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,300,461 - 135,409,760 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1143,215,210 - 143,321,813 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01150,384,623 - 150,491,225 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01143,297,567 - 143,404,159 (-)NCBIRnor_WKY
Rnor_6.01143,171,457 - 143,278,485 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,171,264 - 143,278,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01144,114,219 - 144,220,842 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41137,556,766 - 137,666,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11137,635,181 - 137,745,334 (-)NCBI
Celera1127,351,540 - 127,457,741 (-)NCBICelera
Cytogenetic Map1q31NCBI
Cpeb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541613,981,657 - 14,039,705 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541613,963,300 - 14,038,691 (+)NCBIChiLan1.0ChiLan1.0
CPEB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11580,443,096 - 80,546,163 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1580,443,096 - 80,526,948 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01562,949,264 - 63,053,994 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CPEB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,405,140 - 54,499,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,405,717 - 54,500,221 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,046,122 - 57,140,348 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,824,324 - 54,918,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,824,563 - 54,919,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,344,656 - 54,439,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,553,850 - 54,648,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,896,337 - 54,990,718 (-)NCBIUU_Cfam_GSD_1.0
Cpeb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,039,489 - 129,118,232 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648317,216,213 - 17,294,534 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648317,216,288 - 17,296,430 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,005,891 - 3,106,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl293,006,532 - 3,106,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605943,983,927 - 44,084,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476818,386,415 - 18,468,879 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system
High
Medium 3 10
Low 1 1 1 13
Below cutoff 8 1 2 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002024   ⟹   ENSSSCP00000001975
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,328,555 - 52,383,732 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000002025   ⟹   ENSSSCP00000001976
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,304,892 - 52,383,500 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000002028   ⟹   ENSSSCP00000001979
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,304,472 - 52,383,732 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053355   ⟹   ENSSSCP00000050569
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,305,576 - 52,383,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067774   ⟹   ENSSSCP00000068356
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,328,765 - 52,383,734 (+)Ensembl
RefSeq Acc Id: NM_001097510   ⟹   NP_001090979
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,329,054 - 52,382,408 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001090979 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAF56219 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001090979   ⟸   NM_001097510
- UniProtKB: A4PES2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001976   ⟸   ENSSSCT00000002025
RefSeq Acc Id: ENSSSCP00000001975   ⟸   ENSSSCT00000002024
RefSeq Acc Id: ENSSSCP00000001979   ⟸   ENSSSCT00000002028
RefSeq Acc Id: ENSSSCP00000068356   ⟸   ENSSSCT00000067774
RefSeq Acc Id: ENSSSCP00000050569   ⟸   ENSSSCT00000053355
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001808 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005015856 UniProtKB/TrEMBL
  ENSSSCG00015079400 UniProtKB/TrEMBL
  ENSSSCG00025068083 UniProtKB/TrEMBL
  ENSSSCG00030065185 UniProtKB/TrEMBL
  ENSSSCG00035056470 UniProtKB/TrEMBL
  ENSSSCG00040002042 UniProtKB/TrEMBL
  ENSSSCG00045003781 UniProtKB/TrEMBL
  ENSSSCG00050074176 UniProtKB/TrEMBL
  ENSSSCG00055018225 UniProtKB/TrEMBL
  ENSSSCG00060041457 UniProtKB/TrEMBL
  ENSSSCG00065043672 UniProtKB/TrEMBL
  ENSSSCG00070017895 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001975 ENTREZGENE
  ENSSSCP00000001975.4 UniProtKB/TrEMBL
  ENSSSCP00000001976.4 UniProtKB/TrEMBL
  ENSSSCP00000001979.3 UniProtKB/TrEMBL
  ENSSSCP00000050569.2 UniProtKB/TrEMBL
  ENSSSCP00000068356.1 UniProtKB/TrEMBL
  ENSSSCP00005015201.1 UniProtKB/TrEMBL
  ENSSSCP00015045683.1 UniProtKB/TrEMBL
  ENSSSCP00025041193.1 UniProtKB/TrEMBL
  ENSSSCP00025041302.1 UniProtKB/TrEMBL
  ENSSSCP00030042113.1 UniProtKB/TrEMBL
  ENSSSCP00035030745.1 UniProtKB/TrEMBL
  ENSSSCP00035030753.1 UniProtKB/TrEMBL
  ENSSSCP00040000813.1 UniProtKB/TrEMBL
  ENSSSCP00045004324.1 UniProtKB/TrEMBL
  ENSSSCP00050044209.1 UniProtKB/TrEMBL
  ENSSSCP00050044212.1 UniProtKB/TrEMBL
  ENSSSCP00055028732.1 UniProtKB/TrEMBL
  ENSSSCP00055028817.1 UniProtKB/TrEMBL
  ENSSSCP00060024035.1 UniProtKB/TrEMBL
  ENSSSCP00060024038.1 UniProtKB/TrEMBL
  ENSSSCP00065025961.1 UniProtKB/TrEMBL
  ENSSSCP00065025963.1 UniProtKB/TrEMBL
  ENSSSCP00070029545.1 UniProtKB/TrEMBL
  ENSSSCP00070029558.1 UniProtKB/TrEMBL
  ENSSSCP00070029562.1 UniProtKB/TrEMBL
  ENSSSCP00070029576.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002024 ENTREZGENE
  ENSSSCT00000002024.5 UniProtKB/TrEMBL
  ENSSSCT00000002025.4 UniProtKB/TrEMBL
  ENSSSCT00000002028.3 UniProtKB/TrEMBL
  ENSSSCT00000053355.2 UniProtKB/TrEMBL
  ENSSSCT00000067774.1 UniProtKB/TrEMBL
  ENSSSCT00005025167.1 UniProtKB/TrEMBL
  ENSSSCT00015107935.1 UniProtKB/TrEMBL
  ENSSSCT00025093880.1 UniProtKB/TrEMBL
  ENSSSCT00025094100.1 UniProtKB/TrEMBL
  ENSSSCT00030091550.1 UniProtKB/TrEMBL
  ENSSSCT00035075506.1 UniProtKB/TrEMBL
  ENSSSCT00035075527.1 UniProtKB/TrEMBL
  ENSSSCT00040002839.1 UniProtKB/TrEMBL
  ENSSSCT00045006369.1 UniProtKB/TrEMBL
  ENSSSCT00050101569.1 UniProtKB/TrEMBL
  ENSSSCT00050101573.1 UniProtKB/TrEMBL
  ENSSSCT00055036181.1 UniProtKB/TrEMBL
  ENSSSCT00055036283.1 UniProtKB/TrEMBL
  ENSSSCT00060056250.1 UniProtKB/TrEMBL
  ENSSSCT00060056255.1 UniProtKB/TrEMBL
  ENSSSCT00065059839.1 UniProtKB/TrEMBL
  ENSSSCT00065059845.1 UniProtKB/TrEMBL
  ENSSSCT00070035369.1 UniProtKB/TrEMBL
  ENSSSCT00070035383.1 UniProtKB/TrEMBL
  ENSSSCT00070035387.1 UniProtKB/TrEMBL
  ENSSSCT00070035401.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP1_N UniProtKB/TrEMBL
  CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  CPEB1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report ssc:100048944 UniProtKB/TrEMBL
NCBI Gene CPEB1 ENTREZGENE
PANTHER PTHR12566 UniProtKB/TrEMBL
Pfam CEBP1_N UniProtKB/TrEMBL
  CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A287B398_PIG UniProtKB/TrEMBL
  A0A4X1UHW9_PIG UniProtKB/TrEMBL
  A0A4X1UK01_PIG UniProtKB/TrEMBL
  A0A4X1UMA2_PIG UniProtKB/TrEMBL
  A0A4X1UN27_PIG UniProtKB/TrEMBL
  A0A5G2QTU1_PIG UniProtKB/TrEMBL
  A0A5K1UU41_PIG UniProtKB/TrEMBL
  A0A8D1BJB0_PIG UniProtKB/TrEMBL
  A4PES2 ENTREZGENE, UniProtKB/TrEMBL
  F1RI92_PIG UniProtKB/TrEMBL
  F1RI95_PIG UniProtKB/TrEMBL
UniProt Secondary F1RI96 UniProtKB/TrEMBL