EPHA1 (EPH receptor A1) - Rat Genome Database

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Gene: EPHA1 (EPH receptor A1) Sus scrofa
Analyze
Symbol: EPHA1
Name: EPH receptor A1
RGD ID: 14083775
Description: ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN positive regulation of stress fiber assembly (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Alzheimer's disease (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Colorectal Neoplasms (ortholog); FOUND IN dendrite (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-A receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,843,299 - 6,860,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,843,305 - 6,860,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,081,296 - 7,098,902 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:27775163   PMID:30032202  


Genomics

Comparative Map Data
EPHA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,843,299 - 6,860,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,843,305 - 6,860,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,081,296 - 7,098,902 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,391,129 - 143,408,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,390,289 - 143,408,856 (-)EnsemblGRCh38hg38GRCh38
GRCh377143,088,222 - 143,105,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,798,327 - 142,816,107 (-)NCBINCBI36Build 36hg18NCBI36
Build 347142,605,042 - 142,622,822NCBI
Celera7137,925,469 - 137,943,251 (-)NCBICelera
Cytogenetic Map7q34-q35NCBI
HuRef7137,425,521 - 137,443,246 (-)NCBIHuRef
CHM1_17143,025,132 - 143,041,700 (-)NCBICHM1_1
T2T-CHM13v2.07144,746,556 - 144,764,287 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,490,337 - 142,508,118 (-)NCBI
Epha1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,335,421 - 42,350,249 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,335,421 - 42,350,202 (-)EnsemblGRCm39 Ensembl
GRCm38642,358,487 - 42,373,314 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,358,487 - 42,373,268 (-)EnsemblGRCm38mm10GRCm38
MGSCv37642,308,486 - 42,323,267 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,288,094 - 42,302,875 (-)NCBIMGSCv36mm8
Celera642,303,129 - 42,317,914 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.65NCBI
Epha1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,213,022 - 72,227,543 (-)NCBIGRCr8
mRatBN7.2471,246,409 - 71,260,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,246,409 - 71,260,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,166,330 - 76,180,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0472,079,589 - 72,094,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0470,499,006 - 70,513,444 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0471,749,100 - 71,763,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,749,242 - 71,763,679 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,553,640 - 136,568,077 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,127,872 - 70,142,309 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1470,404,001 - 70,418,438 (-)NCBI
Celera466,176,888 - 66,191,325 (-)NCBICelera
Cytogenetic Map4q24NCBI
Epha1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494255,162 - 268,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955494256,008 - 268,777 (+)NCBIChiLan1.0ChiLan1.0
EPHA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,243,561 - 180,261,720 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,253,818 - 32,271,977 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,385,894 - 135,403,632 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,875,028 - 147,892,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,875,363 - 147,892,745 (-)Ensemblpanpan1.1panPan2
EPHA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,287,757 - 6,304,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,287,910 - 6,304,090 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,276,373 - 7,292,601 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,141,123 - 6,157,305 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,141,091 - 6,157,301 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,089,005 - 6,105,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,940,565 - 5,956,781 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,015,778 - 6,032,015 (+)NCBIUU_Cfam_GSD_1.0
Epha1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,055,439 - 12,069,849 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527830,112 - 848,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527833,578 - 847,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,276,941 - 112,294,505 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,277,427 - 112,294,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660729,023,000 - 9,040,431 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480011,364,848 - 11,380,725 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480011,364,685 - 11,380,725 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EPHA1
896 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 3 3 5 1 12 2 2 3
Below cutoff 1 1 10

Sequence


RefSeq Acc Id: ENSSSCT00000017922   ⟹   ENSSSCP00000017441
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl186,843,299 - 6,860,989 (+)Ensembl
RefSeq Acc Id: XM_003134566   ⟹   XP_003134614
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1186,843,305 - 6,860,976 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003134614   ⟸   XM_003134566
- UniProtKB: F1SRW1 (UniProtKB/TrEMBL),   A0A8D0UYY4 (UniProtKB/TrEMBL),   A0A4X1UYI0 (UniProtKB/TrEMBL),   A0A8D1FPT9 (UniProtKB/TrEMBL),   A0A8D1VGH6 (UniProtKB/TrEMBL),   A0A8D1ZYA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017441   ⟸   ENSSSCT00000017922
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016459 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038309 UniProtKB/TrEMBL
  ENSSSCG00025066326 UniProtKB/TrEMBL
  ENSSSCG00030041136 UniProtKB/TrEMBL
  ENSSSCG00035022737 UniProtKB/TrEMBL
  ENSSSCG00040068435 UniProtKB/TrEMBL
  ENSSSCG00045000874 UniProtKB/TrEMBL
  ENSSSCG00055022195 UniProtKB/TrEMBL
  ENSSSCG00060041104 UniProtKB/TrEMBL
  ENSSSCG00065071441 UniProtKB/TrEMBL
  ENSSSCG00070020610 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017922 ENTREZGENE
  ENSSSCT00000017922.5 UniProtKB/TrEMBL
  ENSSSCT00005061509.1 UniProtKB/TrEMBL
  ENSSSCT00025091052.1 UniProtKB/TrEMBL
  ENSSSCT00030057117.1 UniProtKB/TrEMBL
  ENSSSCT00035029713.1 UniProtKB/TrEMBL
  ENSSSCT00040093676.1 UniProtKB/TrEMBL
  ENSSSCT00045001290.1 UniProtKB/TrEMBL
  ENSSSCT00055043575.1 UniProtKB/TrEMBL
  ENSSSCT00060055708.1 UniProtKB/TrEMBL
  ENSSSCT00065098177.1 UniProtKB/TrEMBL
  ENSSSCT00070040966.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/TrEMBL
  EphA1_rcpt_lig-bd UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/TrEMBL
KEGG Report ssc:100519989 UniProtKB/TrEMBL
NCBI Gene EPHA1 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/TrEMBL
  EPHRIN TYPE-A RECEPTOR 3 UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PIRSF TyrPK_ephrin_receptor UniProtKB/TrEMBL
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A4X1UYI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K9A5_PIG UniProtKB/TrEMBL
  A0A8D0UYY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C8K9_PIG UniProtKB/TrEMBL
  A0A8D1FPT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VGH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZYA9 ENTREZGENE, UniProtKB/TrEMBL
  F1SRW1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87729 ENTREZGENE