GRIP1 (glutamate receptor interacting protein 1) - Rat Genome Database

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Gene: GRIP1 (glutamate receptor interacting protein 1) Sus scrofa
Analyze
Symbol: GRIP1
Name: glutamate receptor interacting protein 1
RGD ID: 14083356
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN dendrite arborization (ortholog); nervous system development (ortholog); positive regulation of neuron projection arborization (ortholog); ASSOCIATED WITH Fraser syndrome 1 (ortholog); Fraser syndrome 3 (ortholog); intellectual disability (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: glutamate receptor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl530,697,018 - 31,020,790 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2533,972,164 - 34,714,229 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
GRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl530,697,018 - 31,020,790 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2533,972,164 - 34,714,229 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1266,347,431 - 67,069,162 (-)EnsemblGRCh38hg38GRCh38
GRCh381266,347,431 - 67,069,338 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371266,741,211 - 67,463,118 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361265,029,066 - 65,359,020 (-)NCBINCBI36hg18NCBI36
Build 341265,028,871 - 65,145,401NCBI
Celera1266,405,432 - 66,737,052 (-)NCBI
Cytogenetic Map12q14.3NCBI
HuRef1263,792,018 - 64,123,720 (-)NCBIHuRef
CHM1_11266,708,221 - 67,039,968 (-)NCBICHM1_1
Grip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910119,289,810 - 119,923,172 (+)NCBIGRCm39mm39
GRCm39 Ensembl10119,289,735 - 119,923,166 (+)Ensembl
GRCm3810119,453,238 - 120,087,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10119,453,830 - 120,087,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710118,891,370 - 119,512,653 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610118,857,374 - 119,478,657 (+)NCBImm8
Celera10121,814,033 - 122,436,941 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1067.33NCBI
Grip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2754,934,856 - 55,592,274 (+)NCBI
Rnor_6.0 Ensembl764,672,722 - 64,864,404 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0764,672,723 - 64,854,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0764,890,319 - 65,072,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4759,157,276 - 59,306,131 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1759,170,845 - 59,326,858 (+)NCBI
Celera752,073,046 - 52,340,208 (+)NCBICelera
Cytogenetic Map7q22NCBI
Grip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545812,967,089 - 13,214,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545812,970,858 - 13,179,369 (-)NCBIChiLan1.0ChiLan1.0
GRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11222,826,257 - 23,069,480 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1222,744,177 - 23,069,480 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01221,841,611 - 22,562,418 (+)NCBIMhudiblu_PPA_v0panPan3
GRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1108,801,023 - 9,187,684 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl108,802,529 - 9,063,848 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha108,731,329 - 9,389,361 (-)NCBI
ROS_Cfam_1.0108,912,752 - 9,572,589 (-)NCBI
UMICH_Zoey_3.1108,789,226 - 9,449,620 (-)NCBI
UNSW_CanFamBas_1.0109,034,586 - 9,695,263 (-)NCBI
UU_Cfam_GSD_1.0109,155,858 - 9,816,627 (-)NCBI
Grip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494549,107,221 - 49,757,054 (+)NCBI
SpeTri2.0NW_0049365454,353,056 - 4,606,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11162,018,037 - 62,464,440 (-)NCBI
ChlSab1.1 Ensembl1162,015,463 - 62,335,876 (-)Ensembl
Vero_WHO_p1.0NW_023666037182,985,387 - 183,705,463 (+)NCBI
Grip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3
Low 4 3 20 2 3 1
Below cutoff 6 2 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021092898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK343285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU407138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU457722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU633233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP067340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01095445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000000516   ⟹   ENSSSCP00000000508
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 30,881,194 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000033391   ⟹   ENSSSCP00000029227
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 31,020,436 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000062302   ⟹   ENSSSCP00000031880
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 30,926,192 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064279   ⟹   ENSSSCP00000059298
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 31,020,790 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075831   ⟹   ENSSSCP00000063052
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 30,981,252 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085224   ⟹   ENSSSCP00000067688
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,018 - 30,981,252 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090175   ⟹   ENSSSCP00000071416
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl530,697,041 - 30,981,252 (-)Ensembl
RefSeq Acc Id: XM_021092898   ⟹   XP_020948557
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092899   ⟹   XP_020948558
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092900   ⟹   XP_020948559
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092901   ⟹   XP_020948560
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092902   ⟹   XP_020948561
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092905   ⟹   XP_020948564
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092906   ⟹   XP_020948565
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092907   ⟹   XP_020948566
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,023,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092908   ⟹   XP_020948567
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092909   ⟹   XP_020948568
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092910   ⟹   XP_020948569
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092911   ⟹   XP_020948570
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092912   ⟹   XP_020948571
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092913   ⟹   XP_020948572
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,023,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092914   ⟹   XP_020948573
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092916   ⟹   XP_020948575
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092917   ⟹   XP_020948576
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021092918   ⟹   XP_020948577
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020948567   ⟸   XM_021092908
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_020948577   ⟸   XM_021092918
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_020948573   ⟸   XM_021092914
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_020948576   ⟸   XM_021092917
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_020948575   ⟸   XM_021092916
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_020948571   ⟸   XM_021092912
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_020948569   ⟸   XM_021092910
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_020948558   ⟸   XM_021092899
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020948570   ⟸   XM_021092911
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_020948565   ⟸   XM_021092906
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020948568   ⟸   XM_021092909
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_020948564   ⟸   XM_021092905
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020948561   ⟸   XM_021092902
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020948559   ⟸   XM_021092900
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020948560   ⟸   XM_021092901
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948557   ⟸   XM_021092898
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020948572   ⟸   XM_021092913
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020948566   ⟸   XM_021092907
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSSSCP00000059298   ⟸   ENSSSCT00000064279
RefSeq Acc Id: ENSSSCP00000000508   ⟸   ENSSSCT00000000516
RefSeq Acc Id: ENSSSCP00000071416   ⟸   ENSSSCT00000090175
RefSeq Acc Id: ENSSSCP00000063052   ⟸   ENSSSCT00000075831
RefSeq Acc Id: ENSSSCP00000067688   ⟸   ENSSSCT00000085224
RefSeq Acc Id: ENSSSCP00000031880   ⟸   ENSSSCT00000062302
RefSeq Acc Id: ENSSSCP00000029227   ⟸   ENSSSCT00000033391
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000000508 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000029227 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000031880 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000059298 UniProtKB/TrEMBL
  ENSSSCP00000063052 UniProtKB/TrEMBL
  ENSSSCP00000067688 UniProtKB/TrEMBL
  ENSSSCP00000071416 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000516 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000033391 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000062302 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000064279 UniProtKB/TrEMBL
  ENSSSCT00000075831 UniProtKB/TrEMBL
  ENSSSCT00000085224 UniProtKB/TrEMBL
  ENSSSCT00000090175 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro GRIP1 UniProtKB/TrEMBL
  GRIP1/2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene GRIP1 ENTREZGENE
PANTHER PTHR46227 UniProtKB/TrEMBL
  PTHR46227:SF3 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A286ZJZ0_PIG UniProtKB/TrEMBL
  A0A287BRM8_PIG UniProtKB/TrEMBL
  A0A5G2QXX1_PIG UniProtKB/TrEMBL
  A0A5G2R2J9_PIG UniProtKB/TrEMBL
  A0A5G2RAQ6_PIG UniProtKB/TrEMBL
  F1SH70_PIG UniProtKB/TrEMBL
  K7GMX8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88690 ENTREZGENE