CAVIN3 (caveolae associated protein 3) - Rat Genome Database

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Gene: CAVIN3 (caveolae associated protein 3) Sus scrofa
Analyze
Symbol: CAVIN3
Name: caveolae associated protein 3
RGD ID: 14082550
Description: ENCODES a protein that exhibits protein kinase C binding (ortholog); INVOLVED IN cortical actin cytoskeleton organization (ortholog); negative regulation of fermentation (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN caveola (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PRKCDBP; protein kinase C delta binding protein; protein kinase C delta-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,378,207 - 3,379,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,378,144 - 3,379,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,991,701 - 3,993,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
caveola  (IBA,IEA)
cytoplasm  (IBA,IEA)
membrane  (IEA)
protein-containing complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CAVIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,378,207 - 3,379,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,378,144 - 3,379,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,991,701 - 3,993,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,318,946 - 6,320,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,318,946 - 6,320,532 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,340,176 - 6,341,731 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,296,752 - 6,298,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,296,753 - 6,298,316NCBI
Celera116,459,218 - 6,460,782 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,000,077 - 6,001,641 (-)NCBIHuRef
CHM1_1116,339,390 - 6,340,954 (-)NCBICHM1_1
T2T-CHM13v2.0116,377,369 - 6,378,924 (-)NCBIT2T-CHM13v2.0
Cavin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,129,823 - 105,131,404 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,129,290 - 105,131,507 (-)EnsemblGRCm39 Ensembl
GRCm387105,480,616 - 105,482,197 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,480,083 - 105,482,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,629,130 - 112,630,711 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,354,437 - 105,356,018 (-)NCBIMGSCv36mm8
Celera7105,752,686 - 105,754,267 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.87NCBI
Cavin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,238,384 - 169,239,973 (-)NCBIGRCr8
mRatBN7.21159,826,549 - 159,828,138 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,826,549 - 159,828,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,848,411 - 167,849,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01175,034,401 - 175,035,989 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,930,386 - 167,931,974 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,317,099 - 170,318,688 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,317,113 - 170,318,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,323,467 - 177,325,056 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,212,922 - 163,214,511 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,308,398 - 163,309,988 (-)NCBI
Celera1157,761,026 - 157,762,615 (-)NCBICelera
Cytogenetic Map1q32NCBI
Cavin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,050,109 - 22,054,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,052,885 - 22,054,672 (-)NCBIChiLan1.0ChiLan1.0
CAVIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,756,518 - 8,759,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,720,377 - 8,722,903 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,451,364 - 6,453,206 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,133,656 - 6,135,468 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,133,656 - 6,135,485 (-)Ensemblpanpan1.1panPan2
CAVIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,661,235 - 29,663,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,661,980 - 29,716,313 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,363,357 - 29,365,498 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,487,609 - 30,489,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,485,318 - 30,489,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12129,808,695 - 29,810,832 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,974,518 - 29,976,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,169,413 - 30,171,524 (-)NCBIUU_Cfam_GSD_1.0
Cavin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,286,605 - 56,288,167 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842387,551 - 388,882 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842387,320 - 388,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,504,726 - 58,507,200 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,504,782 - 58,507,438 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,332,864 - 156,334,561 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248177,836,557 - 7,838,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248177,836,671 - 7,838,590 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CAVIN3
42 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1
Low 7 4 3 4 2 20 2 3 3
Below cutoff 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000015984   ⟹   ENSSSCP00000015563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl93,378,207 - 3,379,847 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000078906   ⟹   ENSSSCP00000069429
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl93,378,277 - 3,379,624 (+)Ensembl
RefSeq Acc Id: XM_003357139   ⟹   XP_003357187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.193,378,144 - 3,379,851 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003357187   ⟸   XM_003357139
- UniProtKB: F1RMM0 (UniProtKB/TrEMBL),   A0A8D0V8J8 (UniProtKB/TrEMBL),   A0A4X1SEN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069429   ⟸   ENSSSCT00000078906
RefSeq Acc Id: ENSSSCP00000015563   ⟸   ENSSSCT00000015984


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014633 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030004208 UniProtKB/TrEMBL
  ENSSSCG00035056453 UniProtKB/TrEMBL
  ENSSSCG00040035291 UniProtKB/TrEMBL
  ENSSSCG00045026313 UniProtKB/TrEMBL
  ENSSSCG00050069865 UniProtKB/TrEMBL
  ENSSSCG00055021257 UniProtKB/TrEMBL
  ENSSSCG00060039604 UniProtKB/TrEMBL
  ENSSSCG00065078615 UniProtKB/TrEMBL
  ENSSSCG00070000398 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015984 ENTREZGENE
  ENSSSCT00000015984.5 UniProtKB/TrEMBL
  ENSSSCT00000078906.2 UniProtKB/TrEMBL
  ENSSSCT00030005551.1 UniProtKB/TrEMBL
  ENSSSCT00035075386.1 UniProtKB/TrEMBL
  ENSSSCT00035075396.1 UniProtKB/TrEMBL
  ENSSSCT00040047403.1 UniProtKB/TrEMBL
  ENSSSCT00040047507.1 UniProtKB/TrEMBL
  ENSSSCT00045044766.1 UniProtKB/TrEMBL
  ENSSSCT00045044828.1 UniProtKB/TrEMBL
  ENSSSCT00050095266.1 UniProtKB/TrEMBL
  ENSSSCT00055041746.1 UniProtKB/TrEMBL
  ENSSSCT00055041847.1 UniProtKB/TrEMBL
  ENSSSCT00060053600.1 UniProtKB/TrEMBL
  ENSSSCT00065109082.1 UniProtKB/TrEMBL
  ENSSSCT00065109084.1 UniProtKB/TrEMBL
  ENSSSCT00070000725.1 UniProtKB/TrEMBL
  ENSSSCT00070000728.1 UniProtKB/TrEMBL
  ENSSSCT00070000733.1 UniProtKB/TrEMBL
InterPro Cavin_fam UniProtKB/TrEMBL
KEGG Report ssc:100513556 UniProtKB/TrEMBL
NCBI Gene CAVIN3 ENTREZGENE
PANTHER PTHR15240 UniProtKB/TrEMBL
  PTHR15240:SF2 UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/TrEMBL
UniProt A0A4X1SEN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SF55_PIG UniProtKB/TrEMBL
  A0A4X1SF62_PIG UniProtKB/TrEMBL
  A0A5G2QWV6_PIG UniProtKB/TrEMBL
  A0A8D0V8J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A978_PIG UniProtKB/TrEMBL
  A0A8D1RLU0_PIG UniProtKB/TrEMBL
  F1RMM0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86218 ENTREZGENE