OSTF1 (osteoclast stimulating factor 1) - Rat Genome Database

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Gene: OSTF1 (osteoclast stimulating factor 1) Sus scrofa
Analyze
Symbol: OSTF1
Name: osteoclast stimulating factor 1
RGD ID: 14081628
Description: ENCODES a protein that exhibits SH3 domain binding (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: osteoclast-stimulating factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1228,142,041 - 228,197,035 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11228,142,159 - 228,196,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,040,336 - 255,094,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OSTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1228,142,041 - 228,197,035 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11228,142,159 - 228,196,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,040,336 - 255,094,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38975,088,514 - 75,147,265 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl975,088,514 - 75,147,265 (+)EnsemblGRCh38hg38GRCh38
GRCh37977,703,430 - 77,762,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36976,893,279 - 76,951,583 (+)NCBINCBI36Build 36hg18NCBI36
Build 34974,933,012 - 74,991,315NCBI
Celera948,280,889 - 48,339,602 (+)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef947,530,287 - 47,588,961 (+)NCBIHuRef
CHM1_1977,849,845 - 77,908,558 (+)NCBICHM1_1
T2T-CHM13v2.0987,244,992 - 87,303,677 (+)NCBIT2T-CHM13v2.0
Ostf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391918,557,728 - 18,609,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1918,493,501 - 18,609,187 (-)EnsemblGRCm39 Ensembl
GRCm381918,580,364 - 18,631,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1918,516,137 - 18,631,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371918,654,854 - 18,706,303 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361918,647,774 - 18,698,828 (-)NCBIMGSCv36mm8
Celera1919,266,732 - 19,317,937 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1913.17NCBI
Ostf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,428,661 - 225,475,851 (-)NCBIGRCr8
mRatBN7.21216,002,037 - 216,049,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,002,044 - 216,049,221 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1224,335,617 - 224,382,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01231,272,159 - 231,319,347 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01224,090,148 - 224,137,330 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01234,749,568 - 234,796,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1234,749,568 - 234,796,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,849,346 - 241,896,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,182,802 - 222,229,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,346,828 - 222,393,888 (-)NCBI
Celera1213,301,382 - 213,348,398 (-)NCBICelera
Cytogenetic Map1q51NCBI
Ostf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555123,940,056 - 3,989,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555123,940,056 - 3,989,892 (-)NCBIChiLan1.0ChiLan1.0
OSTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,257,668 - 74,315,923 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1974,263,596 - 74,321,862 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0949,687,482 - 49,745,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1973,961,958 - 74,003,067 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl973,973,913 - 74,003,067 (+)Ensemblpanpan1.1panPan2
OSTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1183,085,225 - 83,188,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl183,085,440 - 83,188,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha183,549,739 - 83,604,787 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0183,501,258 - 83,590,355 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1183,287,322 - 83,342,314 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0183,005,397 - 83,060,459 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0183,733,999 - 83,820,855 (-)NCBIUU_Cfam_GSD_1.0
Ostf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947130,277,225 - 130,329,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650310,843,893 - 10,895,318 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650310,843,680 - 10,895,779 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSTF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11286,140,711 - 86,197,474 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1286,140,588 - 86,198,572 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603874,584,528 - 74,640,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ostf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248112,686,417 - 2,746,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248112,686,474 - 2,745,317 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OSTF1
1291 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005808   ⟹   ENSSSCP00000005664
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,142,050 - 228,197,035 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000042535   ⟹   ENSSSCP00000040545
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,142,041 - 228,197,035 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000042536   ⟹   ENSSSCP00000049638
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,142,249 - 228,197,035 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000074466   ⟹   ENSSSCP00000064734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,178,222 - 228,196,800 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078161   ⟹   ENSSSCP00000067362
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1228,169,333 - 228,197,035 (+)Ensembl
RefSeq Acc Id: NM_214005   ⟹   NP_999170
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11228,142,159 - 228,196,808 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999170 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM82161 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000005664.3
  ENSSSCP00000040545
  ENSSSCP00000040545.1
  ENSSSCP00000049638.2
  ENSSSCP00000064734.1
  ENSSSCP00000067362.1
  ENSSSCP00005028802
  ENSSSCP00015018007.1
  ENSSSCP00015018103.1
  ENSSSCP00015018156.1
  ENSSSCP00015018234.1
  ENSSSCP00025019326.1
  ENSSSCP00025019372.1
  ENSSSCP00025019406.1
  ENSSSCP00025019436.1
  ENSSSCP00030030514.1
  ENSSSCP00030030529.1
  ENSSSCP00030030535.1
  ENSSSCP00030030546.1
  ENSSSCP00035012193.1
  ENSSSCP00035012197.1
  ENSSSCP00035012199.1
  ENSSSCP00035012205.1
  ENSSSCP00040020544.1
  ENSSSCP00040020562.1
  ENSSSCP00040020579.1
  ENSSSCP00040020648.1
  ENSSSCP00045033723.1
  ENSSSCP00045033799.1
  ENSSSCP00045033884.1
  ENSSSCP00045034101.1
  ENSSSCP00050046549.1
  ENSSSCP00050046552.1
  ENSSSCP00050046553.1
  ENSSSCP00050046558.1
  ENSSSCP00055039844.1
  ENSSSCP00055039919.1
  ENSSSCP00055039985.1
  ENSSSCP00055040159.1
  ENSSSCP00060009012.1
  ENSSSCP00060009017.1
  ENSSSCP00060009020.1
  ENSSSCP00060009022.1
  ENSSSCP00065045529.1
  ENSSSCP00065045549.1
  ENSSSCP00065045553.1
  ENSSSCP00065045570.1
  ENSSSCP00070048545.1
  ENSSSCP00070048548.1
  ENSSSCP00070048552.1
  ENSSSCP00070048556.1
  ENSSSCP00070048557.1
  ENSSSCP00070048558.1
GenBank Protein Q8MJ49 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999170   ⟸   NM_214005
- UniProtKB: Q8MJ49 (UniProtKB/Swiss-Prot),   A0A480LC49 (UniProtKB/TrEMBL),   A0A8D1RXH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000005664   ⟸   ENSSSCT00000005808
Ensembl Acc Id: ENSSSCP00000064734   ⟸   ENSSSCT00000074466
Ensembl Acc Id: ENSSSCP00000067362   ⟸   ENSSSCT00000078161
Ensembl Acc Id: ENSSSCP00000049638   ⟸   ENSSSCT00000042536
Ensembl Acc Id: ENSSSCP00000040545   ⟸   ENSSSCT00000042535
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005273 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005029432 UniProtKB/Swiss-Prot
  ENSSSCG00015033274 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025033181 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030047635 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035023739 UniProtKB/TrEMBL
  ENSSSCG00040036826 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045028413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050076870 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055025207 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060016387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065074717 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070028477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005808.5 UniProtKB/TrEMBL
  ENSSSCT00000042535 ENTREZGENE
  ENSSSCT00000042535.2 UniProtKB/Swiss-Prot
  ENSSSCT00000042536.2 UniProtKB/TrEMBL
  ENSSSCT00000074466.2 UniProtKB/TrEMBL
  ENSSSCT00000078161.1 UniProtKB/TrEMBL
  ENSSSCT00005046830 UniProtKB/Swiss-Prot
  ENSSSCT00015045432.1 UniProtKB/TrEMBL
  ENSSSCT00015045728.1 UniProtKB/Swiss-Prot
  ENSSSCT00015045863.1 UniProtKB/TrEMBL
  ENSSSCT00015046047.1 UniProtKB/TrEMBL
  ENSSSCT00025045331.1 UniProtKB/TrEMBL
  ENSSSCT00025045439.1 UniProtKB/Swiss-Prot
  ENSSSCT00025045525.1 UniProtKB/TrEMBL
  ENSSSCT00025045587.1 UniProtKB/TrEMBL
  ENSSSCT00030066620.1 UniProtKB/TrEMBL
  ENSSSCT00030066651.1 UniProtKB/Swiss-Prot
  ENSSSCT00030066660.1 UniProtKB/TrEMBL
  ENSSSCT00030066675.1 UniProtKB/TrEMBL
  ENSSSCT00035031158.1 UniProtKB/TrEMBL
  ENSSSCT00035031169.1 UniProtKB/TrEMBL
  ENSSSCT00035031172.1 UniProtKB/TrEMBL
  ENSSSCT00035031184.1 UniProtKB/TrEMBL
  ENSSSCT00040049428.1 UniProtKB/Swiss-Prot
  ENSSSCT00040049494.1 UniProtKB/TrEMBL
  ENSSSCT00040049543.1 UniProtKB/TrEMBL
  ENSSSCT00040049691.1 UniProtKB/TrEMBL
  ENSSSCT00045048507.1 UniProtKB/Swiss-Prot
  ENSSSCT00045048616.1 UniProtKB/TrEMBL
  ENSSSCT00045048735.1 UniProtKB/TrEMBL
  ENSSSCT00045049014.1 UniProtKB/TrEMBL
  ENSSSCT00050105690.1 UniProtKB/Swiss-Prot
  ENSSSCT00050105693.1 UniProtKB/TrEMBL
  ENSSSCT00050105694.1 UniProtKB/TrEMBL
  ENSSSCT00050105701.1 UniProtKB/TrEMBL
  ENSSSCT00055049870.1 UniProtKB/Swiss-Prot
  ENSSSCT00055049965.1 UniProtKB/TrEMBL
  ENSSSCT00055050045.1 UniProtKB/TrEMBL
  ENSSSCT00055050258.1 UniProtKB/TrEMBL
  ENSSSCT00060021849.1 UniProtKB/TrEMBL
  ENSSSCT00060021856.1 UniProtKB/TrEMBL
  ENSSSCT00060021859.1 UniProtKB/Swiss-Prot
  ENSSSCT00060021862.1 UniProtKB/TrEMBL
  ENSSSCT00065103099.1 UniProtKB/TrEMBL
  ENSSSCT00065103139.1 UniProtKB/Swiss-Prot
  ENSSSCT00065103148.1 UniProtKB/TrEMBL
  ENSSSCT00065103168.1 UniProtKB/TrEMBL
  ENSSSCT00070057116.1 UniProtKB/Swiss-Prot
  ENSSSCT00070057119.1 UniProtKB/Swiss-Prot
  ENSSSCT00070057123.1 UniProtKB/TrEMBL
  ENSSSCT00070057127.1 UniProtKB/TrEMBL
  ENSSSCT00070057128.1 UniProtKB/TrEMBL
  ENSSSCT00070057129.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397066 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene OSTF1 ENTREZGENE
PANTHER OSTEOCLAST-STIMULATING FACTOR 1 UniProtKB/Swiss-Prot
  OSTEOCLAST-STIMULATING FACTOR 1 UniProtKB/Swiss-Prot
  OSTEOCLAST-STIMULATING FACTOR 1 UniProtKB/TrEMBL
  OSTEOCLAST-STIMULATING FACTOR 1 UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P67PHOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2C9F365_PIG UniProtKB/TrEMBL
  A0A480LC49 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W333_PIG UniProtKB/TrEMBL
  A0A5G2QR17_PIG UniProtKB/TrEMBL
  A0A5S6I0Y5_PIG UniProtKB/TrEMBL
  A0A8D0NHD3_PIG UniProtKB/TrEMBL
  A0A8D0RWH1_PIG UniProtKB/TrEMBL
  A0A8D0X4N6_PIG UniProtKB/TrEMBL
  A0A8D0Z3I2_PIG UniProtKB/TrEMBL
  A0A8D1RXH9 ENTREZGENE, UniProtKB/TrEMBL
  OSTF1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A5G2R2G9 UniProtKB/TrEMBL
  A0A8D0JVM2 UniProtKB/TrEMBL
VGNC ID VGNC:91085 ENTREZGENE