PTCHD1 (patched domain containing 1) - Rat Genome Database

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Gene: PTCHD1 (patched domain containing 1) Sus scrofa
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Symbol: PTCHD1
Name: patched domain containing 1
RGD ID: 14081533
Description: INVOLVED IN excitatory chemical synaptic transmission (ortholog); inhibitory chemical synaptic transmission (ortholog); long-term memory (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN plasma membrane (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: patched domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX19,507,998 - 19,563,296 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X19,508,501 - 19,563,298 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X20,851,579 - 20,904,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PTCHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX19,507,998 - 19,563,296 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X19,508,501 - 19,563,298 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X20,851,579 - 20,904,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTCHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX23,334,849 - 23,404,374 (+)EnsemblGRCh38hg38GRCh38
GRCh38X23,334,369 - 23,404,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X23,352,966 - 23,422,491 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X23,262,906 - 23,324,839 (+)NCBINCBI36hg18NCBI36
Build 34X23,112,751 - 23,172,076NCBI
CeleraX27,474,669 - 27,536,553 (+)NCBI
Cytogenetic MapXp22.11NCBI
HuRefX21,094,048 - 21,155,060 (+)NCBIHuRef
CHM1_1X23,384,049 - 23,445,953 (+)NCBICHM1_1
Ptchd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X154,352,732 - 154,407,185 (-)NCBIGRCm39mm39
GRCm39 EnsemblX154,356,451 - 154,406,810 (-)Ensembl
GRCm38X155,569,736 - 155,624,170 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX155,573,455 - 155,623,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X152,004,279 - 152,057,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X150,914,257 - 150,964,043 (-)NCBImm8
CeleraX138,872,944 - 138,926,972 (-)NCBICelera
Cytogenetic MapXF3NCBI
Ptchd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X39,681,910 - 39,733,416 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX39,681,910 - 39,733,519 (+)Ensembl
Rnor_6.0X42,558,912 - 42,610,430 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX42,558,931 - 42,614,242 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X42,866,040 - 42,917,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X61,079,670 - 61,131,155 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX40,277,508 - 40,329,013 (+)NCBICelera
Cytogenetic MapXq21NCBI
Ptchd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555093,715,771 - 3,767,541 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555093,716,086 - 3,767,541 (+)NCBIChiLan1.0ChiLan1.0
PTCHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X23,305,555 - 23,366,273 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX23,305,555 - 23,366,273 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X15,929,619 - 15,991,194 (+)NCBIMhudiblu_PPA_v0panPan3
PTCHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X19,096,787 - 19,153,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX19,096,559 - 19,148,528 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X19,050,277 - 19,105,259 (+)NCBI
UMICH_Zoey_3.1X19,089,857 - 19,144,818 (+)NCBI
UNSW_CanFamBas_1.0X19,119,773 - 19,174,752 (+)NCBI
UU_Cfam_GSD_1.0X19,176,247 - 19,231,008 (+)NCBI
Ptchd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X12,031,839 - 12,087,657 (+)NCBI
SpeTri2.0NW_0049366241,072,857 - 1,125,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTCHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X21,810,530 - 21,874,109 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX21,810,956 - 21,870,417 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605623,674,097 - 23,736,621 (+)NCBIVero_WHO_p1.0
Ptchd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248298,458,430 - 8,513,011 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system
High
Medium 2 2
Low 2 1 3 3 21 1
Below cutoff 3 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037376   ⟹   ENSSSCP00000037209
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX19,507,998 - 19,563,296 (+)Ensembl
RefSeq Acc Id: XM_021080574   ⟹   XP_020936233
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X19,508,501 - 19,563,298 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020936233 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020936233   ⟸   XM_021080574
- Sequence:
RefSeq Acc Id: ENSSSCP00000037209   ⟸   ENSSSCT00000037376
Protein Domains
SSD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032433 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070023405 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000037209 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070039364 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037376 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070046658 UniProtKB/TrEMBL
InterPro Ptc/Disp UniProtKB/TrEMBL
  SSD UniProtKB/TrEMBL
NCBI Gene PTCHD1 ENTREZGENE
Pfam Patched UniProtKB/TrEMBL
PROSITE SSD UniProtKB/TrEMBL
UniProt A0A286ZZZ3_PIG UniProtKB/TrEMBL
  A0A4X1VF44_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91942 ENTREZGENE