LOC100516910 (olfactory receptor 8S1-like) - Rat Genome Database

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Pathways
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Gene: LOC100516910 (olfactory receptor 8S1-like) Sus scrofa
Analyze
Symbol: LOC100516910
Name: olfactory receptor 8S1-like
RGD ID: 14079856
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); odorant binding (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1578,758,583 - 78,762,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,952,233 - 81,953,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC100516910
150 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

musculoskeletal system reproductive system
High
Medium
Low 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021092624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021092624   ⟹   XP_020948283
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1578,758,583 - 78,762,590 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020948283   ⟸   XM_021092624
- UniProtKB: A0A8D0NSZ8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00015044365 UniProtKB/TrEMBL
  ENSSSCG00025000535 UniProtKB/TrEMBL
  ENSSSCG00035053144 UniProtKB/TrEMBL
  ENSSSCG00040037874 UniProtKB/TrEMBL
  ENSSSCG00045032811 UniProtKB/TrEMBL
  ENSSSCG00050039024 UniProtKB/TrEMBL
  ENSSSCG00055021413 UniProtKB/TrEMBL
  ENSSSCG00060040864 UniProtKB/TrEMBL
  ENSSSCG00065040747 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00015059167.1 UniProtKB/TrEMBL
  ENSSSCT00025000633.1 UniProtKB/TrEMBL
  ENSSSCT00035070908.1 UniProtKB/TrEMBL
  ENSSSCT00040050656.1 UniProtKB/TrEMBL
  ENSSSCT00045055966.1 UniProtKB/TrEMBL
  ENSSSCT00050052632.1 UniProtKB/TrEMBL
  ENSSSCT00055042034.1 UniProtKB/TrEMBL
  ENSSSCT00060055374.1 UniProtKB/TrEMBL
  ENSSSCT00065055709.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100516910 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8D0NSZ8 ENTREZGENE, UniProtKB/TrEMBL