HYDIN (HYDIN axonemal central pair apparatus protein) - Rat Genome Database

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Gene: HYDIN (HYDIN axonemal central pair apparatus protein) Sus scrofa
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Symbol: HYDIN
Name: HYDIN axonemal central pair apparatus protein
RGD ID: 14078112
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); brain development (ortholog); cilium movement (ortholog); ASSOCIATED WITH hydrocephalus (ortholog); Kartagener syndrome (ortholog); primary ciliary dyskinesia 5 (ortholog); FOUND IN axonemal central apparatus (ortholog); axonemal central pair projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: hydrocephalus-inducing protein homolog; LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1613,895,276 - 14,307,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,620,710 - 13,692,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
HYDIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1613,895,276 - 14,307,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,620,710 - 13,692,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HYDIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1670,802,084 - 71,230,722 (-)EnsemblGRCh38hg38GRCh38
GRCh381670,802,084 - 71,230,722 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371670,835,987 - 71,264,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,398,790 - 69,822,070 (-)NCBINCBI36hg18NCBI36
Build 341669,618,511 - 69,822,070NCBI
Celera1655,520,311 - 55,575,377 (-)NCBI
Celera1654,678,628 - 54,681,256 (+)NCBI
Cytogenetic Map16q22.2NCBI
HuRef1656,715,138 - 56,723,192 (-)NCBIHuRef
HuRef1656,726,220 - 56,729,834 (-)NCBIHuRef
HuRef1656,731,920 - 56,737,384 (-)NCBIHuRef
HuRef1656,741,351 - 56,744,315 (-)NCBIHuRef
HuRef1656,754,507 - 56,755,119 (-)NCBIHuRef
HuRef1656,672,780 - 56,695,211 (-)NCBIHuRef
HuRef1656,803,982 - 56,812,392 (-)NCBIHuRef
HuRef1656,814,587 - 56,818,523 (-)NCBIHuRef
HuRef1656,839,105 - 56,841,261 (-)NCBIHuRef
HuRef1656,848,912 - 56,849,419 (-)NCBIHuRef
HuRef1656,876,513 - 56,883,862 (-)NCBIHuRef
HuRef1656,698,004 - 56,700,908 (-)NCBIHuRef
HuRef1656,701,719 - 56,707,739 (-)NCBIHuRef
HuRef1656,709,524 - 56,710,463 (-)NCBIHuRef
HuRef1656,764,478 - 56,767,061 (-)NCBIHuRef
HuRef1656,788,809 - 56,798,331 (-)NCBIHuRef
HuRef1656,821,215 - 56,821,805 (-)NCBIHuRef
HuRef1656,898,505 - 56,904,146 (-)NCBIHuRef
HuRef1656,909,274 - 57,028,134 (-)NCBIHuRef
HuRef1656,779,668 - 56,785,043 (-)NCBIHuRef
CHM1_11672,248,642 - 72,671,970 (-)NCBICHM1_1
Hydin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,993,600 - 111,336,885 (+)NCBIGRCm39mm39
GRCm39 Ensembl8110,993,609 - 111,336,885 (+)Ensembl
GRCm388110,266,968 - 110,610,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,266,977 - 110,610,253 (+)EnsemblGRCm38mm10GRCm38
MGSCv378112,790,877 - 113,134,153 (+)NCBIGRCm37mm9NCBIm37
MGSCv368113,156,106 - 113,496,930 (+)NCBImm8
Celera8114,490,763 - 114,833,962 (+)NCBICelera
Cytogenetic Map8D3- E1NCBI
cM Map857.5NCBI
Hydin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21938,236,996 - 38,583,271 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1938,236,464 - 38,583,264 (+)Ensembl
Rnor_6.01941,036,507 - 41,379,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,036,510 - 41,379,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01951,863,272 - 52,206,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,183,008 - 40,531,091 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1937,632,923 - 37,978,530 (+)NCBICelera
Cytogenetic Map19q12NCBI
Hydin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,567,396 - 3,949,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,567,896 - 3,948,807 (-)NCBIChiLan1.0ChiLan1.0
HYDIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11670,640,355 - 71,020,197 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,661,924 - 71,063,631 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01653,785,727 - 54,210,088 (+)NCBIMhudiblu_PPA_v0panPan3
HYDIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,743,872 - 77,104,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,743,972 - 77,045,455 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,703,367 - 77,086,869 (-)NCBI
ROS_Cfam_1.0577,180,159 - 77,563,727 (-)NCBI
UMICH_Zoey_3.1577,001,811 - 77,304,921 (-)NCBI
UNSW_CanFamBas_1.0576,824,136 - 77,207,118 (-)NCBI
UU_Cfam_GSD_1.0577,316,376 - 77,706,201 (-)NCBI
Hydin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,751,855 - 37,126,466 (-)NCBI
SpeTri2.0NW_00493647522,523,962 - 22,836,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYDIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,950,286 - 54,435,770 (-)NCBI
ChlSab1.1 Ensembl553,950,886 - 54,335,689 (-)Ensembl
Vero_WHO_p1.0NW_02366604716,762,946 - 17,189,189 (-)NCBI
Hydin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474612,997,012 - 13,417,034 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021093814   ⟹   XP_020949473
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1613,895,276 - 14,307,790 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020949473 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020949473   ⟸   XM_021093814
- Sequence:
Protein Domains
ASH   Hydin_ADK


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040973 UniProtKB/TrEMBL
  ENSSSCG00070002520 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000033349 UniProtKB/TrEMBL
  ENSSSCP00070003860 UniProtKB/TrEMBL
  ENSSSCP00070003897 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042048 UniProtKB/TrEMBL
  ENSSSCT00070004712 UniProtKB/TrEMBL
  ENSSSCT00070004775 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro ASH UniProtKB/TrEMBL
  Hydin-like UniProtKB/TrEMBL
  Hydin_ADK UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  PapD-like_sf UniProtKB/TrEMBL
NCBI Gene HYDIN ENTREZGENE
PANTHER PTHR23053 UniProtKB/TrEMBL
Pfam ASH UniProtKB/TrEMBL
  Hydin_ADK UniProtKB/TrEMBL
Superfamily-SCOP SSF49354 UniProtKB/TrEMBL
UniProt A0A286ZP34_PIG UniProtKB/TrEMBL
  A0A4X1SMY0_PIG UniProtKB/TrEMBL
  A0A4X1SP50_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89011 ENTREZGENE