NADSYN1 (NAD synthetase 1) - Rat Genome Database

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Gene: NADSYN1 (NAD synthetase 1) Sus scrofa
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Symbol: NADSYN1
Name: NAD synthetase 1
RGD ID: 14077752
Description: ENCODES a protein that exhibits ATP binding (inferred); glutaminase activity (inferred); ligase activity (inferred); INVOLVED IN 'de novo' NAD biosynthetic process (inferred); NAD biosynthetic process (inferred); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; de novo nicotinamide adenine dinucleotide biosynthetic pathway; glutamic acid/glutamate metabolic pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); Dyslipidemias (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamine-dependent NAD(+) synthetase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,334,799 - 2,372,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,334,793 - 2,372,356 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22725,955 - 739,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NADSYN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,334,799 - 2,372,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,334,793 - 2,372,356 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22725,955 - 739,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NADSYN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,453,203 - 71,501,816 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,453,109 - 71,524,107 (+)EnsemblGRCh38hg38GRCh38
GRCh371171,164,249 - 71,212,862 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,841,865 - 70,890,232 (+)NCBINCBI36Build 36hg18NCBI36
Celera1168,457,742 - 68,506,114 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1167,457,809 - 67,506,195 (+)NCBIHuRef
CHM1_11171,048,194 - 71,096,600 (+)NCBICHM1_1
T2T-CHM13v2.01171,380,158 - 71,428,792 (+)NCBIT2T-CHM13v2.0
Nadsyn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,349,326 - 143,376,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,349,321 - 143,376,586 (-)EnsemblGRCm39 Ensembl
GRCm387143,795,589 - 143,822,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,795,584 - 143,822,849 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,981,499 - 151,008,746 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,604,984 - 143,632,231 (-)NCBIMGSCv36mm8
Celera7143,551,948 - 143,579,416 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.32NCBI
Nadsyn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,410,914 - 208,439,242 (-)NCBIGRCr8
mRatBN7.21198,981,559 - 199,009,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,981,604 - 199,009,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,361,638 - 207,389,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,443,560 - 214,471,187 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01207,117,728 - 207,145,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,985,710 - 217,013,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,985,714 - 217,013,702 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,722,251 - 223,869,610 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41204,187,585 - 204,237,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11204,341,037 - 204,390,877 (-)NCBI
Celera1196,545,283 - 196,572,552 (-)NCBICelera
Cytogenetic Map1q42NCBI
Nadsyn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542215,066,708 - 15,114,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542215,067,711 - 15,113,942 (-)NCBIChiLan1.0ChiLan1.0
NADSYN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2972,339,234 - 72,432,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,376,859 - 73,450,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01166,464,320 - 66,537,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11169,735,871 - 69,793,226 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1169,735,871 - 69,788,953 (+)Ensemblpanpan1.1panPan2
NADSYN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11847,216,547 - 47,254,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1847,216,577 - 47,254,514 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,824,631 - 45,862,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,897,151 - 47,934,979 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,897,155 - 47,934,998 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11847,338,020 - 47,375,995 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,924,178 - 46,961,816 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,670,678 - 47,708,646 (-)NCBIUU_Cfam_GSD_1.0
Nadsyn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049473,451,773 - 3,480,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367941,396,703 - 1,423,709 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367941,394,975 - 1,423,807 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NADSYN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.113,189,054 - 3,243,087 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl13,188,348 - 3,238,435 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038100,374,580 - 100,430,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nadsyn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476716,069,780 - 16,115,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476716,069,895 - 16,115,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NADSYN1
1887 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000014055   ⟹   ENSSSCP00000013670
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl22,335,896 - 2,372,256 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000025985   ⟹   ENSSSCP00000027310
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl22,334,799 - 2,372,361 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000027291   ⟹   ENSSSCP00000020550
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl22,335,896 - 2,372,256 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000090628   ⟹   ENSSSCP00000063495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl22,335,896 - 2,372,256 (-)Ensembl
RefSeq Acc Id: XM_021082640   ⟹   XP_020938299
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.122,334,793 - 2,372,356 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082641   ⟹   XP_020938300
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.122,334,793 - 2,372,346 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002341406
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.122,334,793 - 2,372,350 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020938299   ⟸   XM_021082640
- Peptide Label: isoform X1
- UniProtKB: I3LT66 (UniProtKB/TrEMBL),   A0A480X661 (UniProtKB/TrEMBL),   A0A0B8RTF9 (UniProtKB/TrEMBL),   A0A480YKK5 (UniProtKB/TrEMBL),   A0A4X1SES8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938300   ⟸   XM_021082641
- Peptide Label: isoform X2
- UniProtKB: A0A480YQ00 (UniProtKB/TrEMBL),   A0A4X1SFC2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000063495   ⟸   ENSSSCT00000090628
Ensembl Acc Id: ENSSSCP00000027310   ⟸   ENSSSCT00000025985
Ensembl Acc Id: ENSSSCP00000020550   ⟸   ENSSSCT00000027291
Ensembl Acc Id: ENSSSCP00000013670   ⟸   ENSSSCT00000014055
Protein Domains
CN hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025063138 UniProtKB/TrEMBL
  ENSSSCG00030066492 UniProtKB/TrEMBL
  ENSSSCG00035031408 UniProtKB/TrEMBL
  ENSSSCG00040005515 UniProtKB/TrEMBL
  ENSSSCG00045033116 UniProtKB/TrEMBL
  ENSSSCG00050013204 UniProtKB/TrEMBL
  ENSSSCG00055005613 UniProtKB/TrEMBL
  ENSSSCG00060032288 UniProtKB/TrEMBL
  ENSSSCG00065071341 UniProtKB/TrEMBL
  ENSSSCG00070000415 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014055.5 UniProtKB/TrEMBL
  ENSSSCT00000025985 ENTREZGENE
  ENSSSCT00000025985.4 UniProtKB/TrEMBL
  ENSSSCT00000027291 ENTREZGENE
  ENSSSCT00000027291.4 UniProtKB/TrEMBL
  ENSSSCT00000090628.2 UniProtKB/TrEMBL
  ENSSSCT00025086872.1 UniProtKB/TrEMBL
  ENSSSCT00025087137.1 UniProtKB/TrEMBL
  ENSSSCT00025087389.1 UniProtKB/TrEMBL
  ENSSSCT00030092932.1 UniProtKB/TrEMBL
  ENSSSCT00030093024.1 UniProtKB/TrEMBL
  ENSSSCT00030093120.1 UniProtKB/TrEMBL
  ENSSSCT00030093160.1 UniProtKB/TrEMBL
  ENSSSCT00030093195.1 UniProtKB/TrEMBL
  ENSSSCT00030093230.1 UniProtKB/TrEMBL
  ENSSSCT00030093238.1 UniProtKB/TrEMBL
  ENSSSCT00035041584.1 UniProtKB/TrEMBL
  ENSSSCT00035041596.1 UniProtKB/TrEMBL
  ENSSSCT00040007309.1 UniProtKB/TrEMBL
  ENSSSCT00040007343.1 UniProtKB/TrEMBL
  ENSSSCT00040007358.1 UniProtKB/TrEMBL
  ENSSSCT00040007370.1 UniProtKB/TrEMBL
  ENSSSCT00040007376.1 UniProtKB/TrEMBL
  ENSSSCT00040007382.1 UniProtKB/TrEMBL
  ENSSSCT00045056826.1 UniProtKB/TrEMBL
  ENSSSCT00045057080.1 UniProtKB/TrEMBL
  ENSSSCT00050018088.1 UniProtKB/TrEMBL
  ENSSSCT00055010975.1 UniProtKB/TrEMBL
  ENSSSCT00055011116.1 UniProtKB/TrEMBL
  ENSSSCT00055011165.1 UniProtKB/TrEMBL
  ENSSSCT00055011315.1 UniProtKB/TrEMBL
  ENSSSCT00055011382.1 UniProtKB/TrEMBL
  ENSSSCT00055011425.1 UniProtKB/TrEMBL
  ENSSSCT00055011464.1 UniProtKB/TrEMBL
  ENSSSCT00060043730.1 UniProtKB/TrEMBL
  ENSSSCT00060043734.1 UniProtKB/TrEMBL
  ENSSSCT00060043737.1 UniProtKB/TrEMBL
  ENSSSCT00065098035.1 UniProtKB/TrEMBL
  ENSSSCT00065098063.1 UniProtKB/TrEMBL
  ENSSSCT00065098068.1 UniProtKB/TrEMBL
  ENSSSCT00065098107.1 UniProtKB/TrEMBL
  ENSSSCT00065098118.1 UniProtKB/TrEMBL
  ENSSSCT00065098127.1 UniProtKB/TrEMBL
  ENSSSCT00065098133.1 UniProtKB/TrEMBL
  ENSSSCT00070000789.1 UniProtKB/TrEMBL
  ENSSSCT00070000815.1 UniProtKB/TrEMBL
  ENSSSCT00070000846.1 UniProtKB/TrEMBL
  ENSSSCT00070000868.1 UniProtKB/TrEMBL
  ENSSSCT00070000879.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/TrEMBL
  3.60.110.10 UniProtKB/TrEMBL
InterPro C-N_Hydrolase UniProtKB/TrEMBL
  C-N_Hydrolase_sf UniProtKB/TrEMBL
  Gln-dep_NAD_synthase UniProtKB/TrEMBL
  NAD/GMP_synthase UniProtKB/TrEMBL
  NAD_synthase UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
NCBI Gene NADSYN1 ENTREZGENE
PANTHER GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE UniProtKB/TrEMBL
  PTHR23090 UniProtKB/TrEMBL
Pfam CN_hydrolase UniProtKB/TrEMBL
  NAD_synthase UniProtKB/TrEMBL
PIRSF NADS_GAT UniProtKB/TrEMBL
PROSITE CN_HYDROLASE UniProtKB/TrEMBL
Superfamily-SCOP Adenine nucleotide alpha hydrolases-like UniProtKB/TrEMBL
  SSF56317 UniProtKB/TrEMBL
UniProt A0A0B8RTF9 ENTREZGENE
  A0A480X661 ENTREZGENE, UniProtKB/TrEMBL
  A0A480YKK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480YQ00 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SES8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SF02_PIG UniProtKB/TrEMBL
  A0A4X1SF27_PIG UniProtKB/TrEMBL
  A0A4X1SF42_PIG UniProtKB/TrEMBL
  A0A4X1SFC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QZ31_PIG UniProtKB/TrEMBL
  A0A8D0XWY1_PIG UniProtKB/TrEMBL
  A0A8D0XX49_PIG UniProtKB/TrEMBL
  A0A8D0XXK5_PIG UniProtKB/TrEMBL
  A0A8D0Y0G2_PIG UniProtKB/TrEMBL
  A0A8D0ZDU8_PIG UniProtKB/TrEMBL
  A0A8D1BMD1_PIG UniProtKB/TrEMBL
  A0A8D1BQ03_PIG UniProtKB/TrEMBL
  A0A8D1BVG7_PIG UniProtKB/TrEMBL
  A0A8D1BYV1_PIG UniProtKB/TrEMBL
  A0A8D1CGC8_PIG UniProtKB/TrEMBL
  A0A8D1CGJ2_PIG UniProtKB/TrEMBL
  A0A8D1J1B3_PIG UniProtKB/TrEMBL
  A0A8D1PRT9_PIG UniProtKB/TrEMBL
  A0A8D1PRZ8_PIG UniProtKB/TrEMBL
  A0A8D1ZWG9_PIG UniProtKB/TrEMBL
  A0A8D2A1M9_PIG UniProtKB/TrEMBL
  A0A8D2A6W6_PIG UniProtKB/TrEMBL
  F1RY91_PIG UniProtKB/TrEMBL
  I3L939_PIG UniProtKB/TrEMBL
  I3LT66 ENTREZGENE
UniProt Secondary I3LT66 UniProtKB/TrEMBL
VGNC ID VGNC:90567 ENTREZGENE