RNF207 (ring finger protein 207) - Rat Genome Database

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Pathways
Gene: RNF207 (ring finger protein 207) Sus scrofa
Analyze
Symbol: RNF207
Name: ring finger protein 207
RGD ID: 14077333
Description: ENCODES a protein that exhibits Hsp70 protein binding (inferred); metal ion binding (inferred); protein-folding chaperone binding (inferred); INVOLVED IN positive regulation of gene expression (inferred); positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); long QT syndrome (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytoplasm (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNF207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,206,119 - 6,221,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,205,475 - 6,221,299 (+)Ensemblhg38GRCh38
GRCh3716,266,179 - 6,281,359 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,188,776 - 6,203,946 (+)NCBIBuild 36Build 36hg18NCBI36
Celera15,380,701 - 5,395,870 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,414,459 - 5,429,630 (+)NCBIHuRef
CHM1_116,254,831 - 6,270,001 (+)NCBICHM1_1
T2T-CHM13v2.015,731,763 - 5,746,943 (+)NCBIT2T-CHM13v2.0
Rnf207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,391,475 - 152,403,686 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,391,476 - 152,403,450 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384152,307,018 - 152,319,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,307,019 - 152,318,993 (-)Ensemblmm10GRCm38
MGSCv374151,681,132 - 151,692,734 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364151,150,823 - 151,162,408 (-)NCBIMGSCv36mm8
Celera4154,594,355 - 154,605,972 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.02NCBI
Rnf207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,098,074 - 168,112,585 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5168,097,456 - 168,111,094 (-)EnsemblGRCr8
mRatBN7.25162,815,351 - 162,828,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,815,357 - 162,828,375 (-)EnsemblmRatBN7.2
Rnor_6.05169,486,253 - 169,500,451 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,486,257 - 169,499,268 (-)Ensemblrn6Rnor6.0
Rnor_5.05173,039,837 - 173,054,032 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45169,537,947 - 169,550,915 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5161,046,593 - 161,066,093 (-)NCBICelera
Cytogenetic Map5q36NCBI
RNF207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,003,165 - 222,017,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,645,979 - 220,658,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014,972,787 - 4,986,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,228,829 - 6,242,778 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,229,241 - 6,242,770 (+)EnsemblpanPan2panpan1.1
RNF207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,105,200 - 60,119,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,580,768 - 30,596,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,065,260 - 1,079,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF207
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,518,231 - 125,530,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,624,482 - 29,638,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf207
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,178,299 - 5,183,610 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248185,176,316 - 5,183,610 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF207
229 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
7 4 21 3 4 8 9 21 1 3

Sequence


Ensembl Acc Id: ENSSSCT00000003738   ⟹   ENSSSCP00000003652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)Ensembl
RefSeq Acc Id: XM_003481937   ⟹   XP_003481985
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,509 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095247   ⟹   XP_020950906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,503 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095248   ⟹   XP_020950907
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950907   ⟸   XM_021095248
- Peptide Label: isoform X3
- UniProtKB: A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950906   ⟸   XM_021095247
- Peptide Label: isoform X1
- UniProtKB: A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003481985   ⟸   XM_003481937
- Peptide Label: isoform X2
- UniProtKB: F1RIM2 (UniProtKB/TrEMBL),   A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000003652   ⟸   ENSSSCT00000003738
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076428 UniProtKB/TrEMBL
  ENSSSCG00030073273 UniProtKB/TrEMBL
  ENSSSCG00045021442 UniProtKB/TrEMBL
  ENSSSCG00060044041 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003738 ENTREZGENE
  ENSSSCT00000003738.5 UniProtKB/TrEMBL
  ENSSSCT00015103069.1 UniProtKB/TrEMBL
  ENSSSCT00030102597.1 UniProtKB/TrEMBL
  ENSSSCT00045036652.1 UniProtKB/TrEMBL
  ENSSSCT00060059726.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Actin interacting protein 3, C-terminal domain UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PML-like_CC UniProtKB/TrEMBL
  RNF207 UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report ssc:100515143 UniProtKB/TrEMBL
NCBI Gene RNF207 ENTREZGENE
PANTHER PTHR22635 UniProtKB/TrEMBL
  RING FINGER PROTEIN 207 UniProtKB/TrEMBL
Pfam PML_CC UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8D1HZB7 ENTREZGENE, UniProtKB/TrEMBL
  F1RIM2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92379 ENTREZGENE