RNF207 (ring finger protein 207) - Rat Genome Database

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Gene: RNF207 (ring finger protein 207) Sus scrofa
Analyze
Symbol: RNF207
Name: ring finger protein 207
RGD ID: 14077333
Description: ENCODES a protein that exhibits Hsp70 protein binding (inferred); metal ion binding (inferred); protein-folding chaperone binding (inferred); INVOLVED IN positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); long QT syndrome (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNF207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,206,119 - 6,221,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,205,475 - 6,221,299 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,266,179 - 6,281,359 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,188,776 - 6,203,946 (+)NCBINCBI36Build 36hg18NCBI36
Celera15,380,701 - 5,395,870 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,414,459 - 5,429,630 (+)NCBIHuRef
CHM1_116,254,831 - 6,270,001 (+)NCBICHM1_1
T2T-CHM13v2.015,731,763 - 5,746,943 (+)NCBIT2T-CHM13v2.0
Rnf207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,391,475 - 152,403,686 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,391,476 - 152,403,450 (-)EnsemblGRCm39 Ensembl
GRCm384152,307,018 - 152,319,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,307,019 - 152,318,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,681,132 - 151,692,734 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364151,150,823 - 151,162,408 (-)NCBIMGSCv36mm8
Celera4154,594,355 - 154,605,972 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.02NCBI
Rnf207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,098,074 - 168,112,585 (-)NCBIGRCr8
mRatBN7.25162,815,351 - 162,828,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,815,357 - 162,828,375 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05169,486,253 - 169,500,451 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,486,257 - 169,499,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05173,039,837 - 173,054,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,537,947 - 169,550,915 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5161,046,593 - 161,066,093 (-)NCBICelera
Cytogenetic Map5q36NCBI
RNF207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,003,165 - 222,017,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,645,979 - 220,658,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014,972,787 - 4,986,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,228,829 - 6,242,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,229,241 - 6,242,770 (+)Ensemblpanpan1.1panPan2
RNF207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,105,200 - 60,119,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBIUU_Cfam_GSD_1.0
Rnf207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,580,768 - 30,596,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,065,260 - 1,079,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF207
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,518,231 - 125,530,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,624,482 - 29,638,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf207
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,178,299 - 5,183,610 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,176,316 - 5,183,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF207
219 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
7 4 21 3 4 8 9 21 1 3

Sequence


Ensembl Acc Id: ENSSSCT00000003738   ⟹   ENSSSCP00000003652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)Ensembl
RefSeq Acc Id: XM_003481937   ⟹   XP_003481985
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,509 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095247   ⟹   XP_020950906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,503 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095248   ⟹   XP_020950907
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950907   ⟸   XM_021095248
- Peptide Label: isoform X3
- UniProtKB: A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950906   ⟸   XM_021095247
- Peptide Label: isoform X1
- UniProtKB: A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003481985   ⟸   XM_003481937
- Peptide Label: isoform X2
- UniProtKB: F1RIM2 (UniProtKB/TrEMBL),   A0A8D1HZB7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000003652   ⟸   ENSSSCT00000003738
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076428 UniProtKB/TrEMBL
  ENSSSCG00030073273 UniProtKB/TrEMBL
  ENSSSCG00045021442 UniProtKB/TrEMBL
  ENSSSCG00060044041 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003738 ENTREZGENE
  ENSSSCT00000003738.5 UniProtKB/TrEMBL
  ENSSSCT00015103069.1 UniProtKB/TrEMBL
  ENSSSCT00030102597.1 UniProtKB/TrEMBL
  ENSSSCT00045036652.1 UniProtKB/TrEMBL
  ENSSSCT00060059726.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Actin interacting protein 3, C-terminal domain UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PML-like_CC UniProtKB/TrEMBL
  RNF207 UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report ssc:100515143 UniProtKB/TrEMBL
NCBI Gene RNF207 ENTREZGENE
PANTHER PTHR22635 UniProtKB/TrEMBL
  RING FINGER PROTEIN 207 UniProtKB/TrEMBL
Pfam PML_CC UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8D1HZB7 ENTREZGENE, UniProtKB/TrEMBL
  F1RIM2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92379 ENTREZGENE