GNL3 (G protein nucleolar 3) - Rat Genome Database

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Gene: GNL3 (G protein nucleolar 3) Sus scrofa
Analyze
Symbol: GNL3
Name: G protein nucleolar 3
RGD ID: 14076303
Description: ENCODES a protein that exhibits GTP binding (inferred); mRNA 5'-UTR binding (inferred); nucleotide binding (inferred); INVOLVED IN regulation of cell population proliferation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); genetic disease (ortholog); FOUND IN chromosome (inferred); midbody (inferred); nuclear body (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: guanine nucleotide-binding protein-like 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,814,901 - 34,828,517 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,820,243 - 34,828,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,020,526 - 38,028,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
midbody  (IEA)
nuclear body  (IEA)
nucleolus  (IBA,IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GNL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,814,901 - 34,828,517 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,820,243 - 34,828,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,020,526 - 38,028,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,685,920 - 52,694,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,681,156 - 52,694,497 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,719,936 - 52,728,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,694,976 - 52,703,553 (+)NCBINCBI36Build 36hg18NCBI36
Celera352,698,648 - 52,707,224 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,781,776 - 52,790,367 (+)NCBIHuRef
CHM1_1352,672,005 - 52,680,589 (+)NCBICHM1_1
T2T-CHM13v2.0352,718,831 - 52,727,408 (+)NCBIT2T-CHM13v2.0
Gnl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,734,390 - 30,741,088 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,734,390 - 30,741,109 (-)EnsemblGRCm39 Ensembl
GRCm381431,012,433 - 31,019,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,012,433 - 31,019,152 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,825,619 - 31,832,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,841,442 - 29,848,070 (-)NCBIMGSCv36mm8
Celera1427,270,250 - 27,276,906 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Gnl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,213,844 - 6,220,029 (-)NCBIGRCr8
mRatBN7.2166,207,402 - 6,213,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,207,402 - 6,213,392 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,219,249 - 6,225,194 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,364,713 - 7,370,658 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,226,411 - 6,232,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,097,580 - 7,103,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,097,507 - 7,103,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,026,164 - 7,032,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,444,437 - 6,450,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,444,434 - 6,450,373 (-)NCBI
Celera168,975,971 - 8,981,909 (+)NCBICelera
Cytogenetic Map16p16NCBI
Gnl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554302,675,477 - 2,678,113 (+)NCBIChiLan1.0ChiLan1.0
GNL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,679,394 - 52,688,116 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,684,359 - 52,694,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,626,424 - 52,635,009 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,854,257 - 53,862,823 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,854,257 - 53,862,818 (+)Ensemblpanpan1.1panPan2
GNL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,103,298 - 37,110,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,103,320 - 37,110,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,085,316 - 37,092,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,454,085 - 37,461,144 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,453,398 - 37,461,079 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,817,632 - 36,824,634 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,226,252 - 37,233,270 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,503,889 - 37,510,799 (-)NCBIUU_Cfam_GSD_1.0
Gnl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,337,889 - 170,345,199 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,476,392 - 3,483,615 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,476,436 - 3,483,868 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,059,191 - 14,068,388 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,059,204 - 14,068,155 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,831,706 - 152,840,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,519,324 - 4,528,802 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,519,172 - 4,529,241 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GNL3
146 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 5 1 3 1
Low 9 2 3 1 23 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000012529   ⟹   ENSSSCP00000012201
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1334,814,901 - 34,828,517 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106652   ⟹   ENSSSCP00000076022
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1334,820,714 - 34,828,516 (+)Ensembl
RefSeq Acc Id: XM_001928454   ⟹   XP_001928489
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,243 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005669638   ⟹   XP_005669695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,723 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005669640   ⟹   XP_005669697
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,718 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981771   ⟹   XP_013837225
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,821,261 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068948   ⟹   XP_020924607
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,578 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002337557
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,619 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002337558
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11334,820,644 - 34,828,523 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001928489   ⟸   XM_001928454
- Peptide Label: isoform X2
- UniProtKB: F1SH97 (UniProtKB/TrEMBL),   A0A8D2AIE6 (UniProtKB/TrEMBL),   A0A4X1VPS5 (UniProtKB/TrEMBL),   A0A8D0Q0J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924607   ⟸   XM_021068948
- Peptide Label: isoform X5
- UniProtKB: A0A481D3U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005669697   ⟸   XM_005669640
- Peptide Label: isoform X4
- UniProtKB: A0A481D3U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005669695   ⟸   XM_005669638
- Peptide Label: isoform X1
- UniProtKB: A0A8D0PZH7 (UniProtKB/TrEMBL),   A0A8W4F9L9 (UniProtKB/TrEMBL),   A0A8D0I6G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837225   ⟸   XM_013981771
- Peptide Label: isoform X3
- UniProtKB: A0A8D2AG29 (UniProtKB/TrEMBL),   A0A8D1GAC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000012201   ⟸   ENSSSCT00000012529
RefSeq Acc Id: ENSSSCP00000076022   ⟸   ENSSSCT00000106652

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011449 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005010433 UniProtKB/TrEMBL
  ENSSSCG00015074203 UniProtKB/TrEMBL
  ENSSSCG00025017431 UniProtKB/TrEMBL
  ENSSSCG00030070452 UniProtKB/TrEMBL
  ENSSSCG00035067842 UniProtKB/TrEMBL
  ENSSSCG00040075495 UniProtKB/TrEMBL
  ENSSSCG00045012246 UniProtKB/TrEMBL
  ENSSSCG00050073963 UniProtKB/TrEMBL
  ENSSSCG00055030554 UniProtKB/TrEMBL
  ENSSSCG00060032754 UniProtKB/TrEMBL
  ENSSSCG00065078745 UniProtKB/TrEMBL
  ENSSSCG00070025489 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012529 ENTREZGENE
  ENSSSCT00000012529.3 UniProtKB/TrEMBL
  ENSSSCT00000106652 ENTREZGENE
  ENSSSCT00000106652.1 UniProtKB/TrEMBL
  ENSSSCT00005016084.1 UniProtKB/TrEMBL
  ENSSSCT00005016117.1 UniProtKB/TrEMBL
  ENSSSCT00005016186.1 UniProtKB/TrEMBL
  ENSSSCT00015099924.1 UniProtKB/TrEMBL
  ENSSSCT00015100060.1 UniProtKB/TrEMBL
  ENSSSCT00025023559.1 UniProtKB/TrEMBL
  ENSSSCT00025023577.1 UniProtKB/TrEMBL
  ENSSSCT00030098556.1 UniProtKB/TrEMBL
  ENSSSCT00030098596.1 UniProtKB/TrEMBL
  ENSSSCT00035091547.1 UniProtKB/TrEMBL
  ENSSSCT00035091576.1 UniProtKB/TrEMBL
  ENSSSCT00040104747.1 UniProtKB/TrEMBL
  ENSSSCT00040104757.1 UniProtKB/TrEMBL
  ENSSSCT00040104764.1 UniProtKB/TrEMBL
  ENSSSCT00040104771.1 UniProtKB/TrEMBL
  ENSSSCT00040104802.1 UniProtKB/TrEMBL
  ENSSSCT00040104809.1 UniProtKB/TrEMBL
  ENSSSCT00045020978.1 UniProtKB/TrEMBL
  ENSSSCT00045021039.1 UniProtKB/TrEMBL
  ENSSSCT00045021083.1 UniProtKB/TrEMBL
  ENSSSCT00050101188.1 UniProtKB/TrEMBL
  ENSSSCT00050101191.1 UniProtKB/TrEMBL
  ENSSSCT00055060868.1 UniProtKB/TrEMBL
  ENSSSCT00055060875.1 UniProtKB/TrEMBL
  ENSSSCT00055060880.1 UniProtKB/TrEMBL
  ENSSSCT00055060901.1 UniProtKB/TrEMBL
  ENSSSCT00060044358.1 UniProtKB/TrEMBL
  ENSSSCT00060044369.1 UniProtKB/TrEMBL
  ENSSSCT00065109377.1 UniProtKB/TrEMBL
  ENSSSCT00065109388.1 UniProtKB/TrEMBL
  ENSSSCT00065109395.1 UniProtKB/TrEMBL
  ENSSSCT00070050944.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1580.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro G_CP_dom UniProtKB/TrEMBL
  Gnl3_N_dom UniProtKB/TrEMBL
  GTP-bd_ortho_bundle_sf UniProtKB/TrEMBL
  GTP_binding_domain UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report ssc:100155235 UniProtKB/TrEMBL
NCBI Gene GNL3 ENTREZGENE
PANTHER GTP-BINDING PROTEIN-RELATED UniProtKB/TrEMBL
  GUANINE NUCLEOTIDE-BINDING PROTEIN-LIKE 3 UniProtKB/TrEMBL
Pfam GN3L_Grn1 UniProtKB/TrEMBL
  MMR_HSR1 UniProtKB/TrEMBL
PRINTS GTP1OBG UniProtKB/TrEMBL
PROSITE G_CP UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A481D3U1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VPS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I6G0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IFC4_PIG UniProtKB/TrEMBL
  A0A8D0PZH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Q0J6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D253_PIG UniProtKB/TrEMBL
  A0A8D1G6R8_PIG UniProtKB/TrEMBL
  A0A8D1GAC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NYI2_PIG UniProtKB/TrEMBL
  A0A8D1S7W6_PIG UniProtKB/TrEMBL
  A0A8D1V5G1_PIG UniProtKB/TrEMBL
  A0A8D2AG29 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2AIE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F9L9 ENTREZGENE, UniProtKB/TrEMBL
  F1SH97 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88540 ENTREZGENE