PRTFDC1 (phosphoribosyl transferase domain containing 1) - Rat Genome Database

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Gene: PRTFDC1 (phosphoribosyl transferase domain containing 1) Sus scrofa
Analyze
Symbol: PRTFDC1
Name: phosphoribosyl transferase domain containing 1
RGD ID: 14073508
Description: ENCODES a protein that exhibits hypoxanthine phosphoribosyltransferase activity (ortholog); INVOLVED IN GMP catabolic process (ortholog); guanine salvage (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Mouth Neoplasms (ortholog); Ovarian Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: phosphoribosyltransferase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1050,365,786 - 50,463,271 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11050,365,654 - 50,458,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21055,787,876 - 55,911,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
PRTFDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1050,365,786 - 50,463,271 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11050,365,654 - 50,458,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21055,787,876 - 55,911,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRTFDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1024,848,614 - 24,952,606 (-)EnsemblGRCh38hg38GRCh38
GRCh381024,848,614 - 24,952,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371025,137,543 - 25,241,535 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361025,177,560 - 25,281,539 (-)NCBINCBI36hg18NCBI36
Build 341025,177,559 - 25,281,539NCBI
Celera1024,838,423 - 24,942,409 (-)NCBI
Cytogenetic Map10p12.1NCBI
HuRef1024,799,013 - 24,902,637 (-)NCBIHuRef
CHM1_11025,138,118 - 25,242,059 (-)NCBICHM1_1
Gm13377
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39221,049,620 - 21,144,493 (-)NCBIGRCm39mm39
GRCm39 Ensembl221,049,619 - 21,146,765 (-)Ensembl
GRCm38221,044,809 - 21,139,682 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl221,044,808 - 21,141,954 (-)EnsemblGRCm38mm10GRCm38
MGSCv37220,966,435 - 21,061,308 (-)NCBIGRCm37mm9NCBIm37
MGSCv36220,966,435 - 21,061,308 (-)NCBImm8
Celera220,929,324 - 21,017,413 (-)NCBICelera
Cytogenetic Map2A3NCBI
Prtfdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21783,548,792 - 83,654,852 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1783,548,803 - 83,655,179 (-)Ensembl
Rnor_6.01787,926,242 - 88,037,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1787,927,058 - 88,037,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01789,615,538 - 89,724,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,021,578 - 95,140,362 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11795,031,593 - 95,151,192 (-)NCBI
Celera1782,809,745 - 82,908,068 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Prtfdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554294,234,806 - 4,325,896 (+)NCBIChiLan1.0ChiLan1.0
PRTFDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11025,393,227 - 25,497,054 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1025,393,227 - 25,497,054 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01025,023,015 - 25,127,770 (-)NCBIMhudiblu_PPA_v0panPan3
PRTFDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128,551,008 - 8,643,710 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl28,559,319 - 8,642,533 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27,245,705 - 7,339,234 (+)NCBI
ROS_Cfam_1.026,750,858 - 6,844,460 (+)NCBI
UMICH_Zoey_3.126,120,472 - 6,213,933 (+)NCBI
UNSW_CanFamBas_1.026,197,179 - 6,290,517 (+)NCBI
UU_Cfam_GSD_1.026,365,431 - 6,458,849 (+)NCBI
Prtfdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934424,402,890 - 24,485,471 (-)NCBI
SpeTri2.0NW_004936484568,056 - 650,820 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRTFDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1924,568,867 - 24,678,020 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl924,568,692 - 24,677,550 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605130,505,955 - 30,638,727 (-)NCBIVero_WHO_p1.0
Prtfdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247964,014,076 - 4,095,920 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 3 21 1
Low 3 4 5 2 2 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000023555   ⟹   ENSSSCP00000022066
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1050,366,090 - 50,458,472 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000064059   ⟹   ENSSSCP00000045356
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1050,365,786 - 50,461,324 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090193   ⟹   ENSSSCP00000062370
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1050,365,786 - 50,463,271 (+)Ensembl
RefSeq Acc Id: XM_003130768   ⟹   XP_003130816
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11050,365,654 - 50,458,487 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013989731   ⟹   XP_013845185
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11050,365,654 - 50,458,487 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003130816 (Get FASTA)   NCBI Sequence Viewer  
  XP_013845185 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003130816   ⟸   XM_003130768
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013845185   ⟸   XM_013989731
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000045356   ⟸   ENSSSCT00000064059
RefSeq Acc Id: ENSSSCP00000062370   ⟸   ENSSSCT00000090193
RefSeq Acc Id: ENSSSCP00000022066   ⟸   ENSSSCT00000023555
Protein Domains
Pribosyltran


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070012977 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022066 UniProtKB/TrEMBL
  ENSSSCP00000045356 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000062370 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070020991 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023555 UniProtKB/TrEMBL
  ENSSSCT00000064059 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000090193 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070025334 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
InterPro Hxn_phspho_trans UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
NCBI Gene PRTFDC1 ENTREZGENE
Pfam Pribosyltran UniProtKB/TrEMBL
Superfamily-SCOP SSF53271 UniProtKB/TrEMBL
TIGRFAMs HGPRTase UniProtKB/TrEMBL
UniProt A0A287AN84_PIG UniProtKB/TrEMBL
  A0A4X1TUL3_PIG UniProtKB/TrEMBL
  A0A5G2QF67_PIG UniProtKB/TrEMBL
  I3LDD5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95996 ENTREZGENE