ZNF84 (zinc finger protein 84) - Rat Genome Database

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Gene: ZNF84 (zinc finger protein 84) Sus scrofa
Analyze
Symbol: ZNF84
Name: zinc finger protein 84
RGD ID: 14073424
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,555,334 - 22,579,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl1422,593,642 - 22,608,916 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,555,332 - 22,608,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21423,956,744 - 24,008,501 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF84
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,555,334 - 22,579,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl1422,593,642 - 22,608,916 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,555,332 - 22,608,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21423,956,744 - 24,008,501 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF84
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812133,037,509 - 133,063,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12133,037,292 - 133,063,304 (+)EnsemblGRCh38hg38GRCh38
GRCh3712133,614,095 - 133,639,885 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612132,124,239 - 132,146,261 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412132,224,327 - 132,246,538NCBI
Celera12133,314,170 - 133,340,176 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12130,393,348 - 130,419,164 (+)NCBIHuRef
CHM1_112133,433,836 - 133,459,811 (+)NCBICHM1_1
T2T-CHM13v2.012133,094,846 - 133,120,602 (+)NCBIT2T-CHM13v2.0
Zfp300
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,944,447 - 20,955,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,945,413 - 20,955,766 (-)EnsemblGRCm39 Ensembl
GRCm38X21,078,208 - 21,089,698 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX21,079,174 - 21,089,527 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X20,656,276 - 20,666,355 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,236,109 - 20,246,188 (-)NCBIMGSCv36mm8
CeleraX19,213,073 - 19,223,167 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.59NCBI
Zfp68
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81221,139,838 - 21,154,775 (+)NCBIGRCr8
mRatBN7.21216,026,058 - 16,040,995 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,026,079 - 16,040,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,836,615 - 16,851,489 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,460,342 - 17,475,216 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,483,053 - 16,497,961 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,152,596 - 18,167,523 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,152,659 - 18,167,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,141,441 - 20,156,305 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41216,534,544 - 16,549,408 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11216,564,471 - 16,578,254 (+)NCBI
Celera1217,777,113 - 17,791,978 (+)NCBICelera
Cytogenetic Map12q11NCBI
ZNF84
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210141,149,066 - 141,175,275 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112141,145,583 - 141,171,792 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,516,922 - 130,542,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112135,117,957 - 135,145,802 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12135,117,972 - 135,145,802 (+)Ensemblpanpan1.1panPan2
LOC100686099
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126171,044 - 236,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26175,107 - 227,778 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26214,469 - 279,313 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026229,181 - 294,088 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26203,172 - 254,544 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126171,129 - 235,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026257,127 - 322,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026189,234 - 254,343 (-)NCBIUU_Cfam_GSD_1.0
LOC101960039
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118121,849,386 - 121,886,204 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,834,861 - 2,849,812 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,835,094 - 2,846,578 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF84
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,341,955 - 128,362,600 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11128,352,710 - 128,364,802 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037116,429,449 - 116,452,037 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf84
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474728,269,124 - 28,290,032 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_00462474728,295,009 - 28,317,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474728,268,867 - 28,317,387 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF84
1685 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 9
Low 19 7 5 9 4 37 4 5 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010667   ⟹   ENSSSCP00000010390
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,555,334 - 22,579,549 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000010668   ⟹   ENSSSCP00000010391
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,593,642 - 22,608,916 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057956   ⟹   ENSSSCP00000047952
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,559,891 - 22,579,476 (-)Ensembl
RefSeq Acc Id: XM_021072885   ⟹   XP_020928544
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,555,332 - 22,579,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072887   ⟹   XP_020928546
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,555,332 - 22,579,187 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072888   ⟹   XP_020928547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,555,332 - 22,608,944 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338535
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,569,367 - 22,579,460 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020928547   ⟸   XM_021072888
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020928544   ⟸   XM_021072885
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SSA4 (UniProtKB/TrEMBL),   F1RI76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928546   ⟸   XM_021072887
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SSA4 (UniProtKB/TrEMBL),   F1RI76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010390   ⟸   ENSSSCT00000010667
RefSeq Acc Id: ENSSSCP00000010391   ⟸   ENSSSCT00000010668
RefSeq Acc Id: ENSSSCP00000047952   ⟸   ENSSSCT00000057956
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000009730 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015063039 UniProtKB/TrEMBL
  ENSSSCG00025029336 UniProtKB/TrEMBL
  ENSSSCG00030035332 UniProtKB/TrEMBL
  ENSSSCG00035030086 UniProtKB/TrEMBL
  ENSSSCG00040060825 UniProtKB/TrEMBL
  ENSSSCG00045009534 UniProtKB/TrEMBL
  ENSSSCG00055027944 UniProtKB/TrEMBL
  ENSSSCG00060058818 UniProtKB/TrEMBL
  ENSSSCG00065008169 UniProtKB/TrEMBL
  ENSSSCG00070003301 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010667 ENTREZGENE
  ENSSSCT00000010667.5 UniProtKB/TrEMBL
  ENSSSCT00000010668.4 UniProtKB/TrEMBL
  ENSSSCT00015084381.1 UniProtKB/TrEMBL
  ENSSSCT00015084424.1 UniProtKB/TrEMBL
  ENSSSCT00025039913.1 UniProtKB/TrEMBL
  ENSSSCT00025040139.1 UniProtKB/TrEMBL
  ENSSSCT00030048980.1 UniProtKB/TrEMBL
  ENSSSCT00030048993.1 UniProtKB/TrEMBL
  ENSSSCT00035039869.1 UniProtKB/TrEMBL
  ENSSSCT00035039879.1 UniProtKB/TrEMBL
  ENSSSCT00040082755.1 UniProtKB/TrEMBL
  ENSSSCT00040082892.1 UniProtKB/TrEMBL
  ENSSSCT00045016156.1 UniProtKB/TrEMBL
  ENSSSCT00045016231.1 UniProtKB/TrEMBL
  ENSSSCT00055055320.1 UniProtKB/TrEMBL
  ENSSSCT00055055388.1 UniProtKB/TrEMBL
  ENSSSCT00060080227.1 UniProtKB/TrEMBL
  ENSSSCT00060080245.1 UniProtKB/TrEMBL
  ENSSSCT00065010962.1 UniProtKB/TrEMBL
  ENSSSCT00065010967.1 UniProtKB/TrEMBL
  ENSSSCT00070006233.1 UniProtKB/TrEMBL
  ENSSSCT00070006241.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF84 ENTREZGENE
PANTHER B-CELL CLL_LYMPHOMA 6 MEMBER B PROTEIN UniProtKB/TrEMBL
  IP01201P-RELATED UniProtKB/TrEMBL
  SIMILAR TO ZINC FINGER PROTEIN 418 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A4X1SSA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SSA8_PIG UniProtKB/TrEMBL
  F1RI75_PIG UniProtKB/TrEMBL
  F1RI76 ENTREZGENE, UniProtKB/TrEMBL