CAV3 (caveolin 3) - Rat Genome Database

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Gene: CAV3 (caveolin 3) Sus scrofa
Analyze
Symbol: CAV3
Name: caveolin 3
RGD ID: 14072726
Description: ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); nitric-oxide synthase binding (ortholog); INVOLVED IN actin filament organization (ortholog); calcium ion transport (ortholog); cardiac muscle cell development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); intercalated disc (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: caveolin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1365,117,795 - 65,131,273 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11365,117,868 - 65,130,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21372,400,156 - 72,412,174 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin filament organization  (IEA,ISO)
calcium ion transport  (IEA,ISO)
cardiac muscle cell development  (IEA,ISO)
cardiac muscle hypertrophy  (IEA,ISO)
caveola assembly  (IBA,IEA,ISO)
cell differentiation  (IBA,ISO)
cellular response to organonitrogen compound  (ISO)
cholesterol homeostasis  (IEA,ISO)
cytoplasmic microtubule organization  (IEA,ISO)
detection of muscle stretch  (IEA)
endocytosis  (IEA,ISO)
establishment of localization in cell  (IEA,ISO)
glucose homeostasis  (IEA,ISO)
heart trabecula formation  (IEA,ISO)
MAPK cascade  (IEA,ISO)
membrane raft organization  (IEA,ISO)
myoblast fusion  (IEA,ISO)
myotube differentiation  (IEA,ISO)
negative regulation of calcium ion transport  (IEA,ISO)
negative regulation of cardiac muscle hypertrophy  (IEA,ISO)
negative regulation of cell growth involved in cardiac muscle cell development  (ISO)
negative regulation of cell size  (IEA)
negative regulation of MAP kinase activity  (IEA)
negative regulation of MAPK cascade  (IEA,ISO)
negative regulation of membrane depolarization during cardiac muscle cell action potential  (IEA)
negative regulation of nitric-oxide synthase activity  (IEA,ISO)
negative regulation of potassium ion transmembrane transport  (ISO)
negative regulation of potassium ion transmembrane transporter activity  (ISO)
negative regulation of protein kinase activity  (IEA,ISO)
negative regulation of sarcomere organization  (IEA)
nucleus localization  (IEA,ISO)
plasma membrane organization  (IEA,ISO)
plasma membrane repair  (IEA,ISO)
positive regulation of caveolin-mediated endocytosis  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of microtubule polymerization  (ISO)
positive regulation of myotube differentiation  (IEA,ISO)
protein localization  (IEA,ISO)
protein localization to plasma membrane  (IEA,ISO)
regulation of branching involved in mammary gland duct morphogenesis  (IEA,ISO)
regulation of calcium ion import  (IEA)
regulation of calcium ion transmembrane transporter activity  (IEA)
regulation of calcium ion transport  (IEA,ISO)
regulation of cardiac muscle cell action potential involved in regulation of contraction  (IEA)
regulation of cardiac muscle contraction  (IEA)
regulation of cytosolic calcium ion concentration  (IBA)
regulation of heart rate  (IEA)
regulation of membrane depolarization during cardiac muscle cell action potential  (IBA,IEA)
regulation of membrane potential  (IEA,ISO)
regulation of nerve growth factor receptor activity  (IEA,ISO)
regulation of p38MAPK cascade  (IEA,ISO)
regulation of protein kinase B signaling  (IEA,ISO)
regulation of signal transduction by receptor internalization  (IEA,ISO)
regulation of skeletal muscle contraction  (IEA)
regulation of sodium ion transmembrane transporter activity  (IEA)
regulation of transforming growth factor beta receptor signaling pathway  (IEA,ISO)
regulation of ventricular cardiac muscle cell membrane depolarization  (IEA)
regulation of ventricular cardiac muscle cell membrane repolarization  (IEA)
response to hypoxia  (ISO)
response to ischemia  (ISO)
triglyceride metabolic process  (IEA,ISO)
ventricular cardiac muscle cell action potential  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16750814  


Genomics

Comparative Map Data
CAV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1365,117,795 - 65,131,273 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11365,117,868 - 65,130,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21372,400,156 - 72,412,174 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3838,733,802 - 8,746,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl38,733,802 - 8,841,808 (+)EnsemblGRCh38hg38GRCh38
GRCh3738,775,488 - 8,788,444 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3638,750,496 - 8,763,451 (+)NCBINCBI36Build 36hg18NCBI36
Build 3438,750,495 - 8,763,450NCBI
Celera38,710,271 - 8,723,238 (+)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef38,709,553 - 8,722,499 (+)NCBIHuRef
CHM1_138,725,885 - 8,738,871 (+)NCBICHM1_1
T2T-CHM13v2.038,724,971 - 8,737,928 (+)NCBIT2T-CHM13v2.0
Cav3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396112,436,466 - 112,449,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6112,436,466 - 112,449,833 (+)EnsemblGRCm39 Ensembl
GRCm386112,459,505 - 112,472,872 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6112,459,505 - 112,472,872 (+)EnsemblGRCm38mm10GRCm38
MGSCv376112,409,499 - 112,422,866 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366112,425,278 - 112,438,649 (+)NCBIMGSCv36mm8
Celera6114,297,536 - 114,310,896 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.26NCBI
Cav3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24145,582,168 - 145,598,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4145,582,060 - 145,598,137 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4150,974,343 - 150,990,337 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04146,755,146 - 146,771,143 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04145,376,415 - 145,392,431 (+)NCBIRnor_WKY
Rnor_6.04144,382,945 - 144,398,919 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4144,382,945 - 144,398,917 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04207,683,202 - 207,699,176 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44148,294,428 - 148,310,380 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14148,539,268 - 148,555,221 (+)NCBI
Celera4134,152,488 - 134,168,462 (+)NCBICelera
Cytogenetic Map4q41NCBI
Cav3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955561325,944 - 335,914 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955561326,008 - 335,911 (+)NCBIChiLan1.0ChiLan1.0
CAV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan138,748,826 - 8,765,179 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v038,684,829 - 8,697,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.138,928,069 - 8,940,942 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl38,928,069 - 8,940,942 (+)Ensemblpanpan1.1panPan2
CAV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1209,384,901 - 9,398,055 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl209,384,901 - 9,401,196 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha209,418,382 - 9,431,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0209,414,987 - 9,428,087 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl209,414,987 - 9,428,087 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1209,136,869 - 9,150,024 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0209,481,732 - 9,494,836 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0209,455,880 - 9,468,982 (-)NCBIUU_Cfam_GSD_1.0
Cav3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494214,631,527 - 14,644,827 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366024,264,889 - 4,278,161 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366024,264,896 - 4,278,160 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12244,726,597 - 44,740,456 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2244,727,624 - 44,740,459 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041121,826,639 - 121,839,504 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cav3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247313,347,984 - 3,364,581 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247313,348,172 - 3,363,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system musculoskeletal system
High
Medium 2 2
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000040521   ⟹   ENSSSCP00000032766
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1365,117,776 - 65,134,066 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000102209   ⟹   ENSSSCP00000077820
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1365,117,795 - 65,131,273 (+)Ensembl
RefSeq Acc Id: NM_001037149   ⟹   NP_001032226
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11365,117,868 - 65,130,886 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001032226 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAV87139 (Get FASTA)   NCBI Sequence Viewer  
  AAY33918 (Get FASTA)   NCBI Sequence Viewer  
  AAY33919 (Get FASTA)   NCBI Sequence Viewer  
  ABD92696 (Get FASTA)   NCBI Sequence Viewer  
  Q3ZDQ5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001032226   ⟸   NM_001037149
- UniProtKB: Q15G23 (UniProtKB/Swiss-Prot),   Q3ZDQ5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032766   ⟸   ENSSSCT00000040521
RefSeq Acc Id: ENSSSCP00000077820   ⟸   ENSSSCT00000102209


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040643 Ensembl
  ENSSSCG00000056902 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005040539 UniProtKB/Swiss-Prot
  ENSSSCG00015038599 UniProtKB/Swiss-Prot
  ENSSSCG00030041511 UniProtKB/Swiss-Prot
  ENSSSCG00035023113 UniProtKB/Swiss-Prot
  ENSSSCG00040034459 UniProtKB/Swiss-Prot
  ENSSSCG00045017085 UniProtKB/Swiss-Prot
  ENSSSCG00050023439 UniProtKB/Swiss-Prot
  ENSSSCG00055030458 UniProtKB/Swiss-Prot
  ENSSSCG00060049259 UniProtKB/Swiss-Prot
  ENSSSCG00065043396 UniProtKB/Swiss-Prot
  ENSSSCG00070021000 UniProtKB/Swiss-Prot
Ensembl Protein ENSSSCP00000077820 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCP00005040068.1 UniProtKB/Swiss-Prot
  ENSSSCP00015020572.1 UniProtKB/Swiss-Prot
  ENSSSCP00030026234.1 UniProtKB/Swiss-Prot
  ENSSSCP00035011785.1 UniProtKB/Swiss-Prot
  ENSSSCP00040019451.1 UniProtKB/Swiss-Prot
  ENSSSCP00045020142.1 UniProtKB/Swiss-Prot
  ENSSSCP00050013224.1 UniProtKB/Swiss-Prot
  ENSSSCP00055048570.1 UniProtKB/Swiss-Prot
  ENSSSCP00060028642.1 UniProtKB/Swiss-Prot
  ENSSSCP00065025742.1 UniProtKB/Swiss-Prot
  ENSSSCP00070035029.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000102209 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCT00005064858.1 UniProtKB/Swiss-Prot
  ENSSSCT00015051569.1 UniProtKB/Swiss-Prot
  ENSSSCT00030057691.1 UniProtKB/Swiss-Prot
  ENSSSCT00035030273.1 UniProtKB/Swiss-Prot
  ENSSSCT00040046377.1 UniProtKB/Swiss-Prot
  ENSSSCT00045029087.1 UniProtKB/Swiss-Prot
  ENSSSCT00050031641.1 UniProtKB/Swiss-Prot
  ENSSSCT00055060621.1 UniProtKB/Swiss-Prot
  ENSSSCT00060066896.1 UniProtKB/Swiss-Prot
  ENSSSCT00065059351.1 UniProtKB/Swiss-Prot
  ENSSSCT00070041718.1 UniProtKB/Swiss-Prot
InterPro Caveolin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caveolin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:641358 UniProtKB/Swiss-Prot
NCBI Gene CAV3 ENTREZGENE
PANTHER PTHR10844 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10844:SF16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Caveolin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CAVEOLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CAV3_PIG UniProtKB/Swiss-Prot
  Q15G23 ENTREZGENE
  Q17TG6_PIG UniProtKB/TrEMBL
  Q3ZDQ5 ENTREZGENE
UniProt Secondary Q15G23 UniProtKB/Swiss-Prot
VGNC ID VGNC:86216 ENTREZGENE