AHI1 (Abelson helper integration site 1) - Rat Genome Database

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Gene: AHI1 (Abelson helper integration site 1) Sus scrofa
Analyze
Symbol: AHI1
Name: Abelson helper integration site 1
RGD ID: 14072695
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); central nervous system development (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); cerebellar disease (ortholog); FOUND IN adherens junction (ortholog); cell-cell junction (ortholog); centriole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: jouberin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl128,566,397 - 28,760,467 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1128,566,279 - 28,760,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,048,945 - 32,243,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AHI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl128,566,397 - 28,760,467 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1128,566,279 - 28,760,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,048,945 - 32,243,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AHI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386135,283,532 - 135,497,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6135,283,407 - 135,498,434 (-)EnsemblGRCh38hg38GRCh38
GRCh376135,604,670 - 135,818,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366135,646,817 - 135,860,576 (-)NCBINCBI36Build 36hg18NCBI36
Build 346135,646,817 - 135,860,576NCBI
Celera6136,345,472 - 136,559,269 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6133,169,009 - 133,382,975 (-)NCBIHuRef
CHM1_16135,867,357 - 136,081,325 (-)NCBICHM1_1
T2T-CHM13v2.06136,471,820 - 136,685,994 (-)NCBIT2T-CHM13v2.0
Ahi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391020,827,274 - 20,956,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1020,828,446 - 20,956,328 (+)EnsemblGRCm39 Ensembl
GRCm381020,952,232 - 21,080,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1020,952,547 - 21,080,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv371020,672,391 - 20,800,235 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361020,642,080 - 20,769,845 (+)NCBIMGSCv36mm8
Celera1020,846,024 - 20,981,336 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.75NCBI
Ahi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8117,580,859 - 17,711,775 (+)NCBIGRCr8
mRatBN7.2115,762,485 - 15,891,213 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl115,762,462 - 15,891,041 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx115,516,117 - 15,645,446 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,518,001 - 21,647,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0115,742,325 - 15,871,051 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0116,478,127 - 16,601,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl116,478,127 - 16,601,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0118,952,969 - 19,086,123 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0119,111,106 - 19,149,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4116,332,801 - 16,454,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1116,332,862 - 16,454,114 (+)NCBI
Celera114,188,321 - 14,307,100 (+)NCBICelera
Cytogenetic Map1p12NCBI
Ahi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554391,276,760 - 1,474,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554391,277,185 - 1,460,296 (+)NCBIChiLan1.0ChiLan1.0
AHI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25155,261,308 - 155,484,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16153,166,815 - 153,379,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06133,055,026 - 133,273,591 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16137,149,457 - 137,366,731 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6137,156,237 - 137,361,232 (-)Ensemblpanpan1.1panPan2
AHI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1127,966,101 - 28,199,163 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl127,998,874 - 28,198,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha128,845,716 - 29,079,414 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0128,122,122 - 28,354,873 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl128,154,194 - 28,354,314 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1128,008,276 - 28,240,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0127,888,338 - 28,120,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0128,198,308 - 28,432,026 (-)NCBIUU_Cfam_GSD_1.0
Ahi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946123,101,413 - 123,278,028 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365602,881,977 - 3,038,725 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365602,881,631 - 3,057,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11337,918,902 - 38,138,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1337,924,440 - 38,139,366 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604010,124,102 - 10,342,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248862,189,655 - 2,397,364 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248862,189,753 - 2,403,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AHI1
5314 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000004605   ⟹   ENSSSCP00000004502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,760,467 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000060523   ⟹   ENSSSCP00000052672
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,666,656 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000065502   ⟹   ENSSSCP00000058055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,760,467 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000086387   ⟹   ENSSSCP00000072188
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,266 - 28,574,586 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000092499   ⟹   ENSSSCP00000081272
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,759,150 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000095645   ⟹   ENSSSCP00000080479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,760,468 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000101797   ⟹   ENSSSCP00000074922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl128,566,397 - 28,745,445 (+)Ensembl
RefSeq Acc Id: XM_003121183   ⟹   XP_003121231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1128,566,279 - 28,760,471 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003121231   ⟸   XM_003121183
- UniProtKB: F1S3R7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000058055   ⟸   ENSSSCT00000065502
Ensembl Acc Id: ENSSSCP00000052672   ⟸   ENSSSCT00000060523
Ensembl Acc Id: ENSSSCP00000072188   ⟸   ENSSSCT00000086387
Ensembl Acc Id: ENSSSCP00000004502   ⟸   ENSSSCT00000004605
Ensembl Acc Id: ENSSSCP00000080479   ⟸   ENSSSCT00000095645
Ensembl Acc Id: ENSSSCP00000081272   ⟸   ENSSSCT00000092499
Ensembl Acc Id: ENSSSCP00000074922   ⟸   ENSSSCT00000101797
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054659 UniProtKB/TrEMBL
  ENSSSCG00025012953 UniProtKB/TrEMBL
  ENSSSCG00030053862 UniProtKB/TrEMBL
  ENSSSCG00035046879 UniProtKB/TrEMBL
  ENSSSCG00040035394 UniProtKB/TrEMBL
  ENSSSCG00045022402 UniProtKB/TrEMBL
  ENSSSCG00050066536 UniProtKB/TrEMBL
  ENSSSCG00055023627 UniProtKB/TrEMBL
  ENSSSCG00060039156 UniProtKB/TrEMBL
  ENSSSCG00065057874 UniProtKB/TrEMBL
  ENSSSCG00070024730 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004605 ENTREZGENE
  ENSSSCT00000004605.4 UniProtKB/TrEMBL
  ENSSSCT00000060523.3 UniProtKB/TrEMBL
  ENSSSCT00000065502.3 UniProtKB/TrEMBL
  ENSSSCT00000086387.1 UniProtKB/TrEMBL
  ENSSSCT00000092499.1 UniProtKB/TrEMBL
  ENSSSCT00000095645.1 UniProtKB/TrEMBL
  ENSSSCT00000101797.1 UniProtKB/TrEMBL
  ENSSSCT00015073048.1 UniProtKB/TrEMBL
  ENSSSCT00015073165.1 UniProtKB/TrEMBL
  ENSSSCT00025018285.1 UniProtKB/TrEMBL
  ENSSSCT00030075092.1 UniProtKB/TrEMBL
  ENSSSCT00030075131.1 UniProtKB/TrEMBL
  ENSSSCT00030075155.1 UniProtKB/TrEMBL
  ENSSSCT00035062365.1 UniProtKB/TrEMBL
  ENSSSCT00035062374.1 UniProtKB/TrEMBL
  ENSSSCT00035062392.1 UniProtKB/TrEMBL
  ENSSSCT00035062423.1 UniProtKB/TrEMBL
  ENSSSCT00035062429.1 UniProtKB/TrEMBL
  ENSSSCT00035062453.1 UniProtKB/TrEMBL
  ENSSSCT00035062472.1 UniProtKB/TrEMBL
  ENSSSCT00040047831.1 UniProtKB/TrEMBL
  ENSSSCT00040047942.1 UniProtKB/TrEMBL
  ENSSSCT00040047997.1 UniProtKB/TrEMBL
  ENSSSCT00045038245.1 UniProtKB/TrEMBL
  ENSSSCT00045038368.1 UniProtKB/TrEMBL
  ENSSSCT00045038430.1 UniProtKB/TrEMBL
  ENSSSCT00050090664.1 UniProtKB/TrEMBL
  ENSSSCT00055046513.1 UniProtKB/TrEMBL
  ENSSSCT00055046700.1 UniProtKB/TrEMBL
  ENSSSCT00055046953.1 UniProtKB/TrEMBL
  ENSSSCT00055047249.1 UniProtKB/TrEMBL
  ENSSSCT00055047431.1 UniProtKB/TrEMBL
  ENSSSCT00055047616.1 UniProtKB/TrEMBL
  ENSSSCT00055047793.1 UniProtKB/TrEMBL
  ENSSSCT00060052954.1 UniProtKB/TrEMBL
  ENSSSCT00060052961.1 UniProtKB/TrEMBL
  ENSSSCT00060052968.1 UniProtKB/TrEMBL
  ENSSSCT00065079282.1 UniProtKB/TrEMBL
  ENSSSCT00070049568.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AHI1_SH3 UniProtKB/TrEMBL
  Cilium-Associated_Jouberin UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100514806 UniProtKB/TrEMBL
NCBI Gene AHI1 ENTREZGENE
PANTHER JOUBERIN UniProtKB/TrEMBL
  JOUBERIN UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A287B8M2_PIG UniProtKB/TrEMBL
  A0A287BPM4_PIG UniProtKB/TrEMBL
  A0A480MZG9_PIG UniProtKB/TrEMBL
  A0A4X1VK88_PIG UniProtKB/TrEMBL
  A0A8D0XCR0_PIG UniProtKB/TrEMBL
  A0A8D0XDU6_PIG UniProtKB/TrEMBL
  A0A8D0ZX84_PIG UniProtKB/TrEMBL
  A0A8D0ZXA7_PIG UniProtKB/TrEMBL
  A0A8D0ZXU2_PIG UniProtKB/TrEMBL
  A0A8D0ZXX2_PIG UniProtKB/TrEMBL
  A0A8D1A326_PIG UniProtKB/TrEMBL
  A0A8D1A898_PIG UniProtKB/TrEMBL
  A0A8D1CWC5_PIG UniProtKB/TrEMBL
  A0A8D1ECA0_PIG UniProtKB/TrEMBL
  A0A8D1I2W9_PIG UniProtKB/TrEMBL
  A0A8D1I5D3_PIG UniProtKB/TrEMBL
  A0A8D1RMN7_PIG UniProtKB/TrEMBL
  A0A8D1RNK4_PIG UniProtKB/TrEMBL
  A0A8D1RRH7_PIG UniProtKB/TrEMBL
  A0A8D1RT12_PIG UniProtKB/TrEMBL
  A0A8D1RU46_PIG UniProtKB/TrEMBL
  A0A8W4F6R0_PIG UniProtKB/TrEMBL
  A0A8W4FNJ2_PIG UniProtKB/TrEMBL
  A0A8W4FRJ1_PIG UniProtKB/TrEMBL
  F1S3R7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2R4P9 UniProtKB/TrEMBL
VGNC ID VGNC:103021 ENTREZGENE