LOC100737218 (zinc finger protein 256) - Rat Genome Database

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Gene: LOC100737218 (zinc finger protein 256) Sus scrofa
Analyze
Symbol: LOC100737218
Name: zinc finger protein 256
RGD ID: 14071822
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 814; zinc finger protein OZF; ZNF814
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1662,616,736 - 62,658,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,219,919 - 57,254,271 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100737218
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1662,616,736 - 62,658,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,219,919 - 57,254,271 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF256
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381957,940,833 - 57,947,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1957,940,833 - 57,947,706 (-)EnsemblGRCh38hg38GRCh38
GRCh371958,452,201 - 58,459,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,144,013 - 63,150,889 (-)NCBINCBI36Build 36hg18NCBI36
Build 341963,144,014 - 63,150,889NCBI
Celera1955,495,677 - 55,502,553 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1954,763,565 - 54,770,235 (-)NCBIHuRef
CHM1_11958,446,055 - 58,452,930 (-)NCBICHM1_1
T2T-CHM13v2.01961,037,758 - 61,044,631 (-)NCBIT2T-CHM13v2.0
ZNF256
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,220,069 - 64,226,935 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,003,585 - 66,016,892 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01954,952,783 - 54,960,130 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,762,034 - 63,787,197 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1963,762,318 - 63,773,346 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1963,780,525 - 63,787,373 (-)Ensemblpanpan1.1panPan2
ZNF256
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660453,523,451 - 3,529,896 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100737218
504 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3
Low 10 4 3 5 2 20 2 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021097382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021097383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001309211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU928745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP103076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01010940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021097382   ⟹   XP_020953041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,631,020 - 62,637,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097383   ⟹   XP_020953042
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,687 - 62,637,665 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001309211
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,695 - 62,658,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345390
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,631,020 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345391
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,631,020 - 62,658,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345392
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,631,020 - 62,658,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345393
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,631,020 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345394
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,616,736 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345395
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,689 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345396
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,623,272 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345397
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,689 - 62,658,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345398
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,688 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345399
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,626,941 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345400
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,639,685 - 62,649,098 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345401
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1662,622,693 - 62,649,098 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020953041 (Get FASTA)   NCBI Sequence Viewer  
  XP_020953042 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00025003752.1
  ENSSSCP00035033285.1
Reference Protein Sequences
RefSeq Acc Id: XP_020953042   ⟸   XM_021097383
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020953041   ⟸   XM_021097382
- Peptide Label: isoform X1
- Sequence:
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00025007154 UniProtKB/TrEMBL
  ENSSSCG00035060152 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00025009488.1 UniProtKB/TrEMBL
  ENSSSCT00035080667.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100737218 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 728-LIKE UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8D1AMJ5_PIG UniProtKB/TrEMBL