PLA2G12B (phospholipase A2 group XIIB)

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Gene: PLA2G12B (phospholipase A2 group XIIB) Sus scrofa

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Symbol:

PLA2G12B

Name:

phospholipase A2 group XIIB

RGD ID:

14071447

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); phospholipase A2 activity (inferred); INVOLVED IN cholesterol homeostasis (ortholog); low-density lipoprotein particle remodeling (ortholog); triglyceride homeostasis (ortholog); FOUND IN extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

group XIIB secretory phospholipase A2-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	75,753,727 - 75,778,800 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	75,754,525 - 75,778,933 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	81,819,851 - 81,844,252 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

arachidonate secretion (IEA)

cholesterol homeostasis (IBA,ISO)

lipid catabolic process (IEA)

low-density lipoprotein particle remodeling (ISO)

phospholipid metabolic process (IEA)

triglyceride homeostasis (IBA,ISO)

Cellular Component

extracellular region (IEA)

Molecular Function

calcium ion binding (IEA)

phospholipase A2 activity (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:17407547	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PLA2G12B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	75,753,727 - 75,778,800 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	75,754,525 - 75,778,933 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	81,819,851 - 81,844,252 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLA2G12B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	72,934,762 - 72,954,806 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	72,934,762 - 72,954,806 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	74,694,520 - 74,714,564 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,364,944 - 74,384,516 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	74,364,943 - 74,384,516	NCBI
Celera	10	67,980,077 - 67,999,649 (-)	NCBI		Celera
Cytogenetic Map	10	q22.1	NCBI
HuRef	10	68,688,779 - 68,708,351 (-)	NCBI		HuRef
CHM1_1	10	74,976,668 - 74,996,240 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	73,806,140 - 73,826,184 (-)	NCBI		T2T-CHM13v2.0

Pla2g12b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	59,239,242 - 59,257,798 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	59,239,482 - 59,257,798 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	59,403,420 - 59,421,976 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	59,403,660 - 59,421,976 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	58,866,433 - 58,884,724 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	58,799,042 - 58,817,333 (+)	NCBI		MGSCv36	mm8
Celera	10	60,503,964 - 60,522,245 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.54	NCBI

Pla2g12b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	27,910,620 - 27,931,734 (+)	NCBI		GRCr8
mRatBN7.2	20	27,369,196 - 27,389,517 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	27,370,266 - 27,388,743 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	28,989,440 - 29,007,967 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	28,989,491 - 29,007,968 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	30,793,778 - 30,812,293 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	28,813,714 - 28,832,140 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

Pla2g12b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,694,496 - 18,719,337 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	18,694,496 - 18,723,311 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLA2G12B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,111,134 - 85,130,164 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,116,402 - 85,135,486 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	69,482,065 - 69,502,398 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	71,946,072 - 71,965,616 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	71,946,506 - 71,965,482 (-)	Ensembl	panpan1.1		panPan2

PLA2G12B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	23,539,909 - 23,561,211 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	23,541,258 - 23,561,041 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	23,678,362 - 23,699,685 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	23,826,379 - 23,847,936 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	23,827,748 - 23,847,930 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	23,725,146 - 23,746,673 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	23,924,120 - 23,945,646 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,279,156 - 24,300,450 (-)	NCBI		UU_Cfam_GSD_1.0

Pla2g12b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	57,579,733 - 57,604,031 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	6,072,486 - 6,096,791 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	6,072,487 - 6,096,791 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLA2G12B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	58,311,609 - 58,335,286 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	58,312,500 - 58,336,930 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	18,907,588 - 18,935,677 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pla2g12b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	6,653,698 - 6,680,489 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	6,653,307 - 6,680,063 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PLA2G12B
695 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	mesenchyme	mesoderm	renal system
7	5	2	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021071880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK345294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EW113750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01131793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000011263 ⟹ ENSSSCP00000010971

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	75,753,727 - 75,778,800 (-)	Ensembl

RefSeq Acc Id:

NM_001243338 ⟹ NP_001230267

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	75,754,531 - 75,778,859 (-)	NCBI

Sequence:

show sequence

GGCATCTGGCCGCTGGGCTACATATTGGGACTTCCGGGGGCACGGGCCGGGGTCTGAGGAGGGA
CCTCAGGACCTACCTGGCTGCAGGATGAAGCTGCCCACCAGCTTCTTGATTCTGTGGCTGAGCC
TGGAGGGGGTCCTGGTTCAGAGTGGCAGCAGCCCTGACGCAGAGGAGTCCTATTCAGACTGGGG
CCTGCGGCACATCCGGGGCAGCTTTGAATCTGTCAACAGCTACTTCGATTCCTTTCTGGAACTG
CTGGGAGGGAAAAATGGAGTCTGTCAATACCGGTGCCGATATGGAAAGGCACCAATGCCCAGAC
CGGGCTACAAGCCTCAGGAGCCCAATGGCTGCAGCTCCTATTTCCTGGGTCTCAAGGTACCACA
AAGTATGGACTTGGGCATTCCAGCAATGACCAAGTGCTGCAACCAGCTGGACGTCTGTTATGAC
ACTTGTGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCTATCTGTT
CTGACCTCAAGAAGAGTCTGGGCTTTGTCTCCAACGTGGAAGCCTGTGATTCTCTGGCTGATAC
TGTGTTCAACACTGTATGGACCTTGGGCTGCCGACCTTTTATGAATAGTCAGCGGGCAGCCTGC
ATCTGTGCAGAAGAGGAGAAAGAAGAGTTATGAGGAAGAGGTGATTCCTTCCTGGGTTTGAGCG
ATACTACACTGTCAGTCTTGGAGATGGTAGTGCGGCAGACGTGTCTCATCCTTTCTTCCAAAAG
TGTGGATACCATGAAGCAGGAGAAAGGAAACATTATTCTACAGCTGGAAAGTGAGTCTCATCCT
TTGAGCAGAGTTGGAGAAAAGACATGGAGTGAAGACTCTTCACGTTAACATGGGCCTCCCCAGA
AAAGACACACTTGCCTGGAAATTCAGTTCTTAGTTTAAAGACGAAATAAAGACGAAAACACTGG
GATTCCTGGAATTGATAATTATGTTCATAAGTGAAATTTTGGAAAGTCCAACCATTTGGGAGGC
AATGACTTTCCTCTGGTCTATGTTTCAGCTGCCAGTAAGCACCTTACATTTAATAAAGTGTACT
TTTTAGAAAATCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_005671053 ⟹ XP_005671110

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	75,754,525 - 75,778,927 (-)	NCBI

Sequence:

show sequence

GTGTAAAGTCCAGCTCCAGGGAACACACAGATTGAGTGTCCCAGATAATCCCTTTCCCAGTCCC
GCCCGGCATCTGGCCGCTGGGCTACATATTGGGACTTCCGGGGGCACGGGCCGGGGTCTGAGGA
GGGACCTCAGGACCTACCTGGCTGCAGGATGAAGCTGCCCACCAGCTTCTTGATTCTGTGGCTG
AGCCTGGAGGGGGTCCTGGTTCAGAGTGGCAGCAGCCCTGACGCAGAGGAGTCCTATTCAGACT
GGGGCCTGCGGCACATCCGGGGCAGCTTTGAATCTGTCAACAGCTACTTCGATTCCTTTCTGGA
ACTGCTGGGAGGGAAAAATGGAGTCTGTCAATACCGGTGCCGATATGGAAAGGCACCAATGCCC
AGACCGGGCTACAAGCCTCAGGAGCCCAATGGCTGCAGCTCCTATTTCCTGGGTCTCAAGGTAC
CACAAAGTATGGACTTGGGCATTCCAGCAATGACCAAGTGCTGCAACCAGCTGGACGTCTGTTA
TGACACTTGTGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCTATC
TGTTCTGACCTCAAGAAGAGTCTGGGCTTTGTCTCCAACGTGGAAGCAGCCTGTGATTCTCTGG
CTGATACTGTGTTCAACACTGTATGGACCTTGGGCTGCCGACCTTTTATGAATAGTCAGCGGGC
AGCCTGCATCTGTGCAGAAGAGGAGAAAGAAGAGTTATGAGGAAGAGGTGATTCCTTCCTGGGT
TTGAGCGATACTACACTGTCAGTCTTGGAGATGGTAGTGCGGCAGACGTGTCTCATCCTTTCTT
CCAAAAGTGTGGATACCATGAAGCAGGAGAAAGGAAACATTATTCTACAGCTGGAAAGTGAGTC
TCATCCTTTGAGCAGAGTTGGAGAAAAGACATGGAGTGAAGACTCTTCACGTTAACATGGGCCT
CCCCAGAAAAGACACACTTGCCTGGAAATTCAGTTCTTAGTTTAAAGACGAAATAAAGACGAAA
ACACTGGGATTCCTGGAATTGATAATTATGTTCATAAGTGAAATTTTGGAAAGTCCAACCATTT
GGGAGGCAATGACTTTCCTCTGGTCTATGTTTCAGCTGCCAGTAAGCACCTTACATTTAATAAA
GTGTACTTTTTAGAAAATCTGAAAA

hide sequence

RefSeq Acc Id:

XM_005671054 ⟹ XP_005671111

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	75,754,525 - 75,778,930 (-)	NCBI

Sequence:

show sequence

TGTGTGTAAAGTCCAGCTCCAGGGAACACACAGATTGAGTGTCCCAGATAATCCCTTTCCCAGT
CCCGCCCGGCATCTGGCCGCTGGGCTACATATTGGGACTTCCGGGGGCACGGGCCGGGGTCTGA
GGAGGGACCTCAGGACCTACCTGGCTGCAGGATGAAGCTGCCCACCAGCTTCTTGATTCTGTGG
CTGAGCCTGGAGGGGGTCCTGGTTCAGAGTGGCAGCAGCCCTGACGCAGAGGAGTCCTATTCAG
ACTGGGGCCTGCGGCACATCCGGGGCAGCTTTGAATCTGTCAACAGCTACTTCGATTCCTTTCT
GGAACTGCTGGGAGGGAAAAATGGAGTCTGTCAATACCGGTGCCGATATGGAAAGGCACCAATG
CCCAGACCGGGCTACAAGCCTCAGGAGCCCAATGGCTGCAGCTCCTATTTCCTGGGTCTCAAGA
TGGACTTGGGCATTCCAGCAATGACCAAGTGCTGCAACCAGCTGGACGTCTGTTATGACACTTG
TGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCTATCTGTTCTGAC
CTCAAGAAGAGTCTGGGCTTTGTCTCCAACGTGGAAGCAGCCTGTGATTCTCTGGCTGATACTG
TGTTCAACACTGTATGGACCTTGGGCTGCCGACCTTTTATGAATAGTCAGCGGGCAGCCTGCAT
CTGTGCAGAAGAGGAGAAAGAAGAGTTATGAGGAAGAGGTGATTCCTTCCTGGGTTTGAGCGAT
ACTACACTGTCAGTCTTGGAGATGGTAGTGCGGCAGACGTGTCTCATCCTTTCTTCCAAAAGTG
TGGATACCATGAAGCAGGAGAAAGGAAACATTATTCTACAGCTGGAAAGTGAGTCTCATCCTTT
GAGCAGAGTTGGAGAAAAGACATGGAGTGAAGACTCTTCACGTTAACATGGGCCTCCCCAGAAA
AGACACACTTGCCTGGAAATTCAGTTCTTAGTTTAAAGACGAAATAAAGACGAAAACACTGGGA
TTCCTGGAATTGATAATTATGTTCATAAGTGAAATTTTGGAAAGTCCAACCATTTGGGAGGCAA
TGACTTTCCTCTGGTCTATGTTTCAGCTGCCAGTAAGCACCTTACATTTAATAAAGTGTACTTT
TTAGAAAATCTGAAAA

hide sequence

RefSeq Acc Id:

XM_005671055 ⟹ XP_005671112

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	75,754,525 - 75,778,930 (-)	NCBI

Sequence:

show sequence

TGTGTGTAAAGTCCAGCTCCAGGGAACACACAGATTGAGTGTCCCAGATAATCCCTTTCCCAGT
CCCGCCCGGCATCTGGCCGCTGGGCTACATATTGGGACTTCCGGGGGCACGGGCCGGGGTCTGA
GGAGGGACCTCAGGACCTACCTGGCTGCAGGATGAAGCTGCCCACCAGCTTCTTGATTCTGTGG
CTGAGCCTGGAGGGGGTCCTGGTTCAGAGTGGCAGCAGCCCTGACGCAGAGGAGTCCTATTCAG
ACTGGGGCCTGCGGCACATCCGGGGCAGCTTTGAATCTGTCAACAGCTACTTCGATTCCTTTCT
GGAACTGCTGGGAGGGAAAAATGGAGTCTGTCAATACCGGTGCCGATATGGAAAGGCACCAATG
CCCAGACCGGGCTACAAGCCTCAGGAGCCCAATGGCTGCAGCTCCTATTTCCTGGGTCTCAAGA
TGGACTTGGGCATTCCAGCAATGACCAAGTGCTGCAACCAGCTGGACGTCTGTTATGACACTTG
TGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCTATCTGTTCTGAC
CTCAAGAAGAGTCTGGGCTTTGTCTCCAACGTGGAAGCCTGTGATTCTCTGGCTGATACTGTGT
TCAACACTGTATGGACCTTGGGCTGCCGACCTTTTATGAATAGTCAGCGGGCAGCCTGCATCTG
TGCAGAAGAGGAGAAAGAAGAGTTATGAGGAAGAGGTGATTCCTTCCTGGGTTTGAGCGATACT
ACACTGTCAGTCTTGGAGATGGTAGTGCGGCAGACGTGTCTCATCCTTTCTTCCAAAAGTGTGG
ATACCATGAAGCAGGAGAAAGGAAACATTATTCTACAGCTGGAAAGTGAGTCTCATCCTTTGAG
CAGAGTTGGAGAAAAGACATGGAGTGAAGACTCTTCACGTTAACATGGGCCTCCCCAGAAAAGA
CACACTTGCCTGGAAATTCAGTTCTTAGTTTAAAGACGAAATAAAGACGAAAACACTGGGATTC
CTGGAATTGATAATTATGTTCATAAGTGAAATTTTGGAAAGTCCAACCATTTGGGAGGCAATGA
CTTTCCTCTGGTCTATGTTTCAGCTGCCAGTAAGCACCTTACATTTAATAAAGTGTACTTTTTA
GAAAATCTGAAAA

hide sequence

RefSeq Acc Id:

XM_021071880 ⟹ XP_020927539

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	75,754,525 - 75,778,933 (-)	NCBI

Sequence:

show sequence

AGCTGTGTGTAAAGTCCAGCTCCAGGGAACACACAGATTGAGTGTCCCAGATAATCCCTTTCCC
AGTCCCGCCCGGCATCTGGCCGCTGGGCTACATATTGGGACTTCCGGGGGCACGGGCCGGGGTC
TGAGGAGGGACCTCAGGACCTACCTGGCTGCAGGATGAAGCTGCCCACCAGCTTCTTGATTCTG
TGGCTGAGCCTGGAGGGGGTCCTGGTTCAGAGTGGCAGCAGCCCTGACGCAGAGGAGTCCTATT
CAGACTGGGGCCTGCGGCACATCCGGGGCAGCTTTGAATCTGTCAACAGCTACTTCGATTCCTT
TCTGGAACTGCTGGGAGGGAAAAATGGAGTCTGTCAATACCGGTGCCGATATGATGGACTTGGG
CATTCCAGCAATGACCAAGTGCTGCAACCAGCTGGACGTCTGTTATGACACTTGTGGTGCCAAC
AAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCTATCTGTTCTGACCTCAAGAAGA
GTCTGGGCTTTGTCTCCAACGTGGAAGCAGCCTGTGATTCTCTGGCTGATACTGTGTTCAACAC
TGTATGGACCTTGGGCTGCCGACCTTTTATGAATAGTCAGCGGGCAGCCTGCATCTGTGCAGAA
GAGGAGAAAGAAGAGTTATGAGGAAGAGGTGATTCCTTCCTGGGTTTGAGCGATACTACACTGT
CAGTCTTGGAGATGGTAGTGCGGCAGACGTGTCTCATCCTTTCTTCCAAAAGTGTGGATACCAT
GAAGCAGGAGAAAGGAAACATTATTCTACAGCTGGAAAGTGAGTCTCATCCTTTGAGCAGAGTT
GGAGAAAAGACATGGAGTGAAGACTCTTCACGTTAACATGGGCCTCCCCAGAAAAGACACACTT
GCCTGGAAATTCAGTTCTTAGTTTAAAGACGAAATAAAGACGAAAACACTGGGATTCCTGGAAT
TGATAATTATGTTCATAAGTGAAATTTTGGAAAGTCCAACCATTTGGGAGGCAATGACTTTCCT
CTGGTCTATGTTTCAGCTGCCAGTAAGCACCTTACATTTAATAAAGTGTACTTTTTAGAAAATC
TGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001230267	(Get FASTA)	NCBI Sequence Viewer
	XP_005671110	(Get FASTA)	NCBI Sequence Viewer
	XP_005671111	(Get FASTA)	NCBI Sequence Viewer
	XP_005671112	(Get FASTA)	NCBI Sequence Viewer
	XP_020927539	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000010971
	ENSSSCP00000010971.2
	ENSSSCP00015010017.1
	ENSSSCP00025047548.1
	ENSSSCP00030048911.1
	ENSSSCP00030048912.1
	ENSSSCP00035037844.1
	ENSSSCP00035037849.1
	ENSSSCP00040004516.1
	ENSSSCP00045006526.1
	ENSSSCP00050012207.1
	ENSSSCP00055030544.1
	ENSSSCP00060018563.1
	ENSSSCP00065008256.1
	ENSSSCP00070010793.1
	ENSSSCP00070010795.1

RefSeq Acc Id:	XP_020927539 ⟸ XM_021071880
- Peptide Label:	isoform X4
- Sequence:	show sequence MESVNTGADMMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKKSLGFVSNV EAACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL hide sequence

RefSeq Acc Id:	XP_005671112 ⟸ XM_005671055
- Peptide Label:	isoform X3
- Sequence:	show sequence MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVC QYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAK FRWCLHSICSDLKKSLGFVSNVEACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL hide sequence

RefSeq Acc Id:	XP_005671111 ⟸ XM_005671054
- Peptide Label:	isoform X2
- Sequence:	show sequence MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVC QYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAK FRWCLHSICSDLKKSLGFVSNVEAACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL hide sequence

RefSeq Acc Id:	XP_005671110 ⟸ XM_005671053
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0IF95 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVC QYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKVPQSMDLGIPAMTKCCNQLDVCYDTCGANKYR CDAKFRWCLHSICSDLKKSLGFVSNVEAACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEK EEL hide sequence

RefSeq Acc Id:	NP_001230267 ⟸ NM_001243338
- Peptide Label:	precursor
- UniProtKB:	F1SU77 (UniProtKB/TrEMBL), A0A4X1T5X7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVC QYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKVPQSMDLGIPAMTKCCNQLDVCYDTCGANKYR CDAKFRWCLHSICSDLKKSLGFVSNVEACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKE EL hide sequence

Ensembl Acc Id:

ENSSSCP00000010971 ⟸ ENSSSCT00000011263

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000010291	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015019445	UniProtKB/TrEMBL
	ENSSSCG00025076562	UniProtKB/TrEMBL
	ENSSSCG00030074875	UniProtKB/TrEMBL
	ENSSSCG00035066998	UniProtKB/TrEMBL
	ENSSSCG00040009270	UniProtKB/TrEMBL
	ENSSSCG00045005739	UniProtKB/TrEMBL
	ENSSSCG00050021838	UniProtKB/TrEMBL
	ENSSSCG00055019645	UniProtKB/TrEMBL
	ENSSSCG00060032179	UniProtKB/TrEMBL
	ENSSSCG00065015277	UniProtKB/TrEMBL
	ENSSSCG00070006821	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000011263	ENTREZGENE
	ENSSSCT00000011263.5	UniProtKB/TrEMBL
	ENSSSCT00015025662.1	UniProtKB/TrEMBL
	ENSSSCT00025106078.1	UniProtKB/TrEMBL
	ENSSSCT00030105200.1	UniProtKB/TrEMBL
	ENSSSCT00030105201.1	UniProtKB/TrEMBL
	ENSSSCT00035090335.1	UniProtKB/TrEMBL
	ENSSSCT00035090344.1	UniProtKB/TrEMBL
	ENSSSCT00040012003.1	UniProtKB/TrEMBL
	ENSSSCT00045009550.1	UniProtKB/TrEMBL
	ENSSSCT00050029436.1	UniProtKB/TrEMBL
	ENSSSCT00055038445.1	UniProtKB/TrEMBL
	ENSSSCT00060043553.1	UniProtKB/TrEMBL
	ENSSSCT00065020292.1	UniProtKB/TrEMBL
	ENSSSCT00070013094.1	UniProtKB/TrEMBL
	ENSSSCT00070013099.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.90.10	UniProtKB/TrEMBL
InterPro	PLA2G12	UniProtKB/TrEMBL
	PLipase_A2_dom_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100152597	UniProtKB/TrEMBL
NCBI Gene	PLA2G12B	ENTREZGENE
PANTHER	GROUP XIIB SECRETORY PHOSPHOLIPASE A2-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR12824	UniProtKB/TrEMBL
Pfam	PLA2G12	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48619	UniProtKB/TrEMBL
UniProt	A0A4X1T5X7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0IF95	ENTREZGENE
	A0A8D0YAX2_PIG	UniProtKB/TrEMBL
	F1SU77	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:91489	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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