LOC110257710 (protein BEX2-like) - Rat Genome Database

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Gene: LOC110257710 (protein BEX2-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC110257710
Name: protein BEX2-like
RGD ID: 14070311
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN signal transduction (inferred); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X84,029,576 - 84,031,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Variants

.
Variants in LOC110257710
9 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system reproductive system
High
Medium 3 23
Low 4
Below cutoff 2 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021079941   ⟹   XP_020935600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X84,029,576 - 84,031,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079942   ⟹   XP_020935601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X84,029,576 - 84,030,998 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020935600   ⟸   XM_021079941
- Peptide Label: isoform X1
- UniProtKB: A0A8D0YMY9 (UniProtKB/TrEMBL),   A0A287B6G2 (UniProtKB/TrEMBL),   A0A8D1XBF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935601   ⟸   XM_021079942
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SLR5 (UniProtKB/TrEMBL),   A0A8D0PZ31 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039273 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073834 UniProtKB/TrEMBL
  ENSSSCG00025016977 UniProtKB/TrEMBL
  ENSSSCG00030067108 UniProtKB/TrEMBL
  ENSSSCG00035009083 UniProtKB/TrEMBL
  ENSSSCG00040032396 UniProtKB/TrEMBL
  ENSSSCG00045012637 UniProtKB/TrEMBL
  ENSSSCG00050071019 UniProtKB/TrEMBL
  ENSSSCG00055024346 UniProtKB/TrEMBL
  ENSSSCG00060053233 UniProtKB/TrEMBL
  ENSSSCG00065006237 UniProtKB/TrEMBL
  ENSSSCG00070002231 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000060176 ENTREZGENE
  ENSSSCT00000060176.3 UniProtKB/TrEMBL
  ENSSSCT00015099311.1 UniProtKB/TrEMBL
  ENSSSCT00015099328.1 UniProtKB/TrEMBL
  ENSSSCT00025022876.1 UniProtKB/TrEMBL
  ENSSSCT00030093796.1 UniProtKB/TrEMBL
  ENSSSCT00035011377.1 UniProtKB/TrEMBL
  ENSSSCT00035011382.1 UniProtKB/TrEMBL
  ENSSSCT00040043609.1 UniProtKB/TrEMBL
  ENSSSCT00045021475.1 UniProtKB/TrEMBL
  ENSSSCT00045021488.1 UniProtKB/TrEMBL
  ENSSSCT00050096861.1 UniProtKB/TrEMBL
  ENSSSCT00055047990.1 UniProtKB/TrEMBL
  ENSSSCT00060072480.1 UniProtKB/TrEMBL
  ENSSSCT00065008399.1 UniProtKB/TrEMBL
  ENSSSCT00070004129.1 UniProtKB/TrEMBL
  ENSSSCT00070004131.1 UniProtKB/TrEMBL
InterPro BEX UniProtKB/TrEMBL
  TF_A-like/BEX UniProtKB/TrEMBL
NCBI Gene LOC110257710 ENTREZGENE
PANTHER PROTEIN BEX1 UniProtKB/TrEMBL
  PTHR19430 UniProtKB/TrEMBL
Pfam BEX UniProtKB/TrEMBL
UniProt A0A287B6G2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SLR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SN13_PIG UniProtKB/TrEMBL
  A0A8D0PZ31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PZV9_PIG UniProtKB/TrEMBL
  A0A8D0YMY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XBF2 ENTREZGENE, UniProtKB/TrEMBL