DYDC2 (DPY30 domain containing 2) - Rat Genome Database

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Gene: DYDC2 (DPY30 domain containing 2) Sus scrofa
Analyze
Symbol: DYDC2
Name: DPY30 domain containing 2
RGD ID: 14069878
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN Set1C/COMPASS complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DPY30 domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1482,197,189 - 82,209,280 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11482,197,194 - 82,209,477 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,804,970 - 88,817,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
DYDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1482,197,189 - 82,209,280 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11482,197,194 - 82,209,477 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,804,970 - 88,817,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DYDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,344,745 - 80,368,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1080,344,745 - 80,368,073 (+)EnsemblGRCh38hg38GRCh38
GRCh371082,104,501 - 82,127,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361082,106,538 - 82,117,809 (+)NCBINCBI36Build 36hg18NCBI36
Celera1076,106,909 - 76,118,178 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1075,947,715 - 75,970,951 (+)NCBIHuRef
CHM1_11082,387,562 - 82,410,890 (+)NCBICHM1_1
T2T-CHM13v2.01081,213,847 - 81,237,175 (+)NCBIT2T-CHM13v2.0
Dydc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391440,770,573 - 40,795,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1440,771,074 - 40,791,165 (-)EnsemblGRCm39 Ensembl
GRCm381441,048,957 - 41,073,037 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1441,049,117 - 41,069,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv371441,862,498 - 41,882,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361439,957,830 - 39,978,276 (-)NCBIMGSCv36mm8
Celera1437,209,905 - 37,229,113 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1422.36NCBI
Dydc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81616,962,273 - 16,976,034 (-)NCBIGRCr8
mRatBN7.21616,928,172 - 16,941,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1616,928,194 - 16,936,164 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1616,992,426 - 17,006,190 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,119,131 - 18,132,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,045,326 - 17,059,090 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01618,635,235 - 18,649,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1618,635,388 - 18,645,941 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,506,799 - 18,520,613 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,489,349 - 17,503,052 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,153,567 - 17,167,234 (-)NCBICelera
Cytogenetic Map16p14NCBI
Dydc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955510337,286 - 348,640 (+)NCBIChiLan1.0ChiLan1.0
DYDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2892,318,871 - 92,341,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11092,324,197 - 92,348,888 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01076,753,681 - 76,776,990 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11080,366,292 - 80,377,100 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1080,366,287 - 80,377,100 (+)Ensemblpanpan1.1panPan2
DYDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,505,037 - 29,514,787 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,509,614 - 29,514,409 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,630,332 - 29,640,141 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,807,913 - 29,817,818 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,807,924 - 29,817,440 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1429,677,716 - 29,687,538 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,879,966 - 29,889,863 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,234,237 - 30,244,042 (+)NCBIUU_Cfam_GSD_1.0
Dydc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,207,948 - 51,217,369 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936716193,332 - 203,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936716193,371 - 202,521 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,468,299 - 51,478,407 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,468,506 - 51,473,067 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604811,793,315 - 11,803,452 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dydc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248416,794,144 - 6,798,945 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248416,794,243 - 6,806,347 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DYDC2
296 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system reproductive system
High
Medium
Low 8
Below cutoff 1 3 11 1

Sequence


RefSeq Acc Id: ENSSSCT00000011319   ⟹   ENSSSCP00000011027
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1482,197,189 - 82,209,280 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000027839   ⟹   ENSSSCP00000028006
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1482,198,046 - 82,209,280 (+)Ensembl
RefSeq Acc Id: XM_003133090   ⟹   XP_003133138
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11482,197,194 - 82,209,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073006   ⟹   XP_020928665
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11482,197,198 - 82,209,129 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003133138   ⟸   XM_003133090
- UniProtKB: F1SEQ8 (UniProtKB/TrEMBL),   A0A4X1SHP8 (UniProtKB/TrEMBL),   A0A8D1WE71 (UniProtKB/TrEMBL),   A0A8D2CGZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928665   ⟸   XM_021073006
- UniProtKB: A0A4X1SHP8 (UniProtKB/TrEMBL),   F1SEQ8 (UniProtKB/TrEMBL),   A0A8D1WE71 (UniProtKB/TrEMBL),   A0A8D2CGZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011027   ⟸   ENSSSCT00000011319
RefSeq Acc Id: ENSSSCP00000028006   ⟸   ENSSSCT00000027839


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010339 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015000677 UniProtKB/TrEMBL
  ENSSSCG00035029673 UniProtKB/TrEMBL
  ENSSSCG00045016467 UniProtKB/TrEMBL
  ENSSSCG00055007640 UniProtKB/TrEMBL
  ENSSSCG00060064468 UniProtKB/TrEMBL
  ENSSSCG00065073651 UniProtKB/TrEMBL
  ENSSSCG00070001005 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011319 ENTREZGENE
  ENSSSCT00000011319.3 UniProtKB/TrEMBL
  ENSSSCT00015000750.1 UniProtKB/TrEMBL
  ENSSSCT00015000756.1 UniProtKB/TrEMBL
  ENSSSCT00035039323.1 UniProtKB/TrEMBL
  ENSSSCT00045027997.1 UniProtKB/TrEMBL
  ENSSSCT00055014914.1 UniProtKB/TrEMBL
  ENSSSCT00055014943.1 UniProtKB/TrEMBL
  ENSSSCT00060088077.1 UniProtKB/TrEMBL
  ENSSSCT00065101402.1 UniProtKB/TrEMBL
  ENSSSCT00070001908.1 UniProtKB/TrEMBL
  ENSSSCT00070001919.1 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/TrEMBL
InterPro Dpy-30_motif UniProtKB/TrEMBL
  DYDC-like_DD UniProtKB/TrEMBL
  Sdc1/DPY30 UniProtKB/TrEMBL
KEGG Report ssc:100525130 UniProtKB/TrEMBL
NCBI Gene DYDC2 ENTREZGENE
PANTHER DPY30 DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR23356 UniProtKB/TrEMBL
Pfam Dpy-30 UniProtKB/TrEMBL
UniProt A0A4X1SHA4_PIG UniProtKB/TrEMBL
  A0A4X1SHP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WE71 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2CGZ6 ENTREZGENE, UniProtKB/TrEMBL
  F1SEQ8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87494 ENTREZGENE