ARX (aristaless related homeobox) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ARX (aristaless related homeobox) Sus scrofa
Analyze
Symbol: ARX
Name: aristaless related homeobox
RGD ID: 14068877
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN neuron development (ortholog); ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); Aicardi syndrome (ortholog); autistic disorder (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein ARX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX21,067,621 - 21,079,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X21,067,631 - 21,079,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X22,463,824 - 22,474,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX21,067,621 - 21,079,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X21,067,631 - 21,079,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X22,463,824 - 22,474,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X25,003,694 - 25,015,965 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX25,003,694 - 25,016,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37X25,021,811 - 25,034,082 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X24,932,213 - 24,943,775 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X24,781,948 - 24,793,511NCBI
CeleraX29,145,744 - 29,157,998 (-)NCBICelera
Cytogenetic MapXp21.3NCBI
HuRefX22,763,568 - 22,793,924 (-)NCBIHuRef
CHM1_1X25,053,346 - 25,065,599 (-)NCBICHM1_1
T2T-CHM13v2.0X24,587,932 - 24,600,202 (-)NCBIT2T-CHM13v2.0
Arx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X92,330,113 - 92,341,963 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX92,330,051 - 92,341,963 (+)EnsemblGRCm39 Ensembl
GRCm38X93,286,507 - 93,298,357 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX93,286,445 - 93,298,357 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X90,531,985 - 90,543,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X89,539,365 - 89,551,076 (+)NCBIMGSCv36mm8
CeleraX80,208,596 - 80,220,179 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.05NCBI
Arx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X62,010,097 - 62,022,009 (+)NCBIGRCr8
mRatBN7.2X58,016,233 - 58,028,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX58,016,233 - 58,028,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX59,442,698 - 59,454,605 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X62,943,813 - 62,955,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X60,501,842 - 60,513,757 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X62,363,757 - 62,376,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX62,363,757 - 62,376,143 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X62,957,562 - 62,969,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X80,631,375 - 80,643,989 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX58,455,664 - 58,467,636 (+)NCBICelera
Cytogenetic MapXq22NCBI
Arx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555095,326,145 - 5,338,250 (-)NCBIChiLan1.0ChiLan1.0
ARX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X26,800,416 - 26,814,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X26,803,792 - 26,817,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X17,598,858 - 17,612,544 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X24,965,203 - 24,977,939 (-)NCBIpanpan1.1PanPan1.1panPan2
ARX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X20,545,346 - 20,556,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX20,545,346 - 20,556,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X20,498,344 - 20,511,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX20,499,238 - 20,510,100 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X20,538,249 - 20,549,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X20,571,748 - 20,582,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X20,628,835 - 20,639,715 (-)NCBIUU_Cfam_GSD_1.0
Arx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X13,532,367 - 13,551,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936836295,664 - 306,756 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936836295,090 - 306,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X23,499,791 - 23,518,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX23,500,454 - 23,511,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605625,363,945 - 25,376,208 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248971,279,138 - 1,303,210 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARX
70 total Variants

Expression

RNA-SEQ Expression

ectoderm
endoderm
mesenchyme
mesoderm
nervous system
respiratory system
10 2 2 2 10 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021080129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000036584   ⟹   ENSSSCP00000033329
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX21,067,621 - 21,079,723 (-)Ensembl
RefSeq Acc Id: XM_021080129   ⟹   XP_020935788
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X21,067,631 - 21,079,850 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020935788   ⟸   XM_021080129
- UniProtKB: A0A8D1J8V8 (UniProtKB/TrEMBL),   A0A286ZPC4 (UniProtKB/TrEMBL),   A0A8D1MD30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000033329   ⟸   ENSSSCT00000036584
Protein Domains
Homeobox   OAR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020801 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025012151 UniProtKB/TrEMBL
  ENSSSCG00030008105 UniProtKB/TrEMBL
  ENSSSCG00035023714 UniProtKB/TrEMBL
  ENSSSCG00040044694 UniProtKB/TrEMBL
  ENSSSCG00045036868 UniProtKB/TrEMBL
  ENSSSCG00050038793 UniProtKB/TrEMBL
  ENSSSCG00060070964 UniProtKB/TrEMBL
  ENSSSCG00065067063 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036584 ENTREZGENE
  ENSSSCT00000036584.4 UniProtKB/TrEMBL
  ENSSSCT00025016083.1 UniProtKB/TrEMBL
  ENSSSCT00030010962.1 UniProtKB/TrEMBL
  ENSSSCT00035031113.1 UniProtKB/TrEMBL
  ENSSSCT00040059927.1 UniProtKB/TrEMBL
  ENSSSCT00045063531.1 UniProtKB/TrEMBL
  ENSSSCT00050052296.1 UniProtKB/TrEMBL
  ENSSSCT00060096961.1 UniProtKB/TrEMBL
  ENSSSCT00065092036.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  OAR_dom UniProtKB/TrEMBL
  Paired_Homeobox_TFs UniProtKB/TrEMBL
NCBI Gene ARX ENTREZGENE
PANTHER ARISTALESS-RELATED HOMEOBOX PROTEIN-RELATED UniProtKB/TrEMBL
  HOMEOBOX PROTEIN ARISTALESS UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A286ZPC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J8V8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MD30 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85556 ENTREZGENE