CDSN (corneodesmosin) - Rat Genome Database

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Gene: CDSN (corneodesmosin) Sus scrofa
Analyze
Symbol: CDSN
Name: corneodesmosin
RGD ID: 14068095
Description: INVOLVED IN amyloid fibril formation (ortholog); cell-cell adhesion (ortholog); corneocyte desquamation (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); hypotrichosis 2 (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); desmosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein S; S protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,520,142 - 23,524,372 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,520,142 - 23,524,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,309,334 - 27,313,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14673549   PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
CDSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,520,142 - 23,524,372 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,520,142 - 23,524,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,309,334 - 27,313,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,115,087 - 31,120,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,115,087 - 31,120,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,082,864 - 31,088,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,190,849 - 31,196,202 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,191,339 - 31,196,189NCBI
Celera632,683,083 - 32,688,466 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,885,378 - 30,890,761 (-)NCBIHuRef
CHM1_1631,084,956 - 31,090,339 (-)NCBICHM1_1
T2T-CHM13v2.0630,982,815 - 30,988,170 (-)NCBIT2T-CHM13v2.0
Cdsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,853,994 - 35,868,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,863,025 - 35,868,077 (+)EnsemblGRCm39 Ensembl
GRCm381735,543,101 - 35,557,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,552,128 - 35,557,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,689,073 - 35,694,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,160,194 - 35,165,233 (+)NCBIMGSCv36mm8
Celera1739,067,633 - 39,072,920 (+)NCBICelera
Cytogenetic Map17B1NCBI
Cdsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,179,432 - 3,185,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,179,438 - 3,184,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,240,743 - 3,245,574 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0203,245,714 - 3,250,545 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0203,269,983 - 3,274,788 (-)NCBIRnor_WKY
Rnor_6.0203,704,626 - 3,707,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0205,792,983 - 5,795,590 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20606,557 - 612,794 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cdsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583958,668 - 964,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583959,544 - 968,632 (-)NCBIChiLan1.0ChiLan1.0
CDSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,726,602 - 31,731,976 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,727,090 - 31,731,976 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0630,861,199 - 30,867,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CDSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112819,488 - 824,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12820,467 - 823,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12952,855 - 961,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012128,294 - 132,529 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12127,597 - 132,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112823,625 - 827,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012891,795 - 896,141 (-)NCBIUNSW_CanFamBas_1.0
Cdsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,421,192 - 34,426,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837787,301 - 791,388 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936837787,035 - 791,388 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,352,063 - 41,359,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604430,808,711 - 30,814,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,796,341 - 24,799,913 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,796,308 - 24,800,324 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 1 1 1
Below cutoff 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000033574   ⟹   ENSSSCP00000044456
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,520,142 - 23,524,372 (-)Ensembl
RefSeq Acc Id: NM_001128448   ⟹   NP_001121920
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,520,142 - 23,524,372 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001121920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD08421 (Get FASTA)   NCBI Sequence Viewer  
  CAB10690 (Get FASTA)   NCBI Sequence Viewer  
  O19084 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001121920   ⟸   NM_001128448
- Peptide Label: precursor
- UniProtKB: A0A287AKM8 (UniProtKB/TrEMBL),   A0A8D0ZEE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000044456   ⟸   ENSSSCT00000033574


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030903 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035026715 UniProtKB/TrEMBL
  ENSSSCG00045038967 UniProtKB/TrEMBL
  ENSSSCG00050005074 UniProtKB/TrEMBL
  ENSSSCG00055030276 UniProtKB/TrEMBL
  ENSSSCG00060036635 UniProtKB/TrEMBL
  ENSSSCG00070024498 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000044456 ENTREZGENE
  ENSSSCP00000044456.1 UniProtKB/TrEMBL
  ENSSSCP00035013980.1 UniProtKB/TrEMBL
  ENSSSCP00045048139.1 UniProtKB/TrEMBL
  ENSSSCP00050003006.1 UniProtKB/TrEMBL
  ENSSSCP00055048257.1 UniProtKB/TrEMBL
  ENSSSCP00060021240.1 UniProtKB/TrEMBL
  ENSSSCP00070041296.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033574 ENTREZGENE
  ENSSSCT00000033574.3 UniProtKB/TrEMBL
  ENSSSCT00035035257.1 UniProtKB/TrEMBL
  ENSSSCT00045067737.1 UniProtKB/TrEMBL
  ENSSSCT00050006958.1 UniProtKB/TrEMBL
  ENSSSCT00055060225.1 UniProtKB/TrEMBL
  ENSSSCT00060049633.1 UniProtKB/TrEMBL
  ENSSSCT00070048900.1 UniProtKB/TrEMBL
InterPro Corneodesmosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100144482 UniProtKB/TrEMBL
NCBI Gene CDSN ENTREZGENE
PANTHER PTHR23207 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287AKM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VDJ1_PIG UniProtKB/TrEMBL
  A0A8D0ZEE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JL29_PIG UniProtKB/TrEMBL
  CDSN_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q767M8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:109429 ENTREZGENE