UBXN6 (UBX domain protein 6) - Rat Genome Database

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Gene: UBXN6 (UBX domain protein 6) Sus scrofa
Analyze
Symbol: UBXN6
Name: UBX domain protein 6
RGD ID: 14067236
Description: INVOLVED IN endosome to lysosome transport via multivesicular body sorting pathway (inferred); ERAD pathway (inferred); macroautophagy (inferred); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); FOUND IN endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UBX domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,357,517 - 74,378,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,357,522 - 74,378,600 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,858,008 - 74,871,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UBXN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,357,517 - 74,378,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,357,522 - 74,378,600 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,858,008 - 74,871,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBXN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,445,006 - 4,457,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,444,999 - 4,457,794 (-)EnsemblGRCh38hg38GRCh38
GRCh37194,445,003 - 4,457,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,396,261 - 4,408,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 34194,396,260 - 4,408,790NCBI
Celera194,383,244 - 4,396,018 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,207,464 - 4,220,339 (-)NCBIHuRef
CHM1_1194,444,589 - 4,457,323 (-)NCBICHM1_1
T2T-CHM13v2.0194,428,463 - 4,442,199 (-)NCBIT2T-CHM13v2.0
Ubxn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,374,045 - 56,386,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,374,045 - 56,382,028 (-)EnsemblGRCm39 Ensembl
GRCm381756,067,045 - 56,079,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,067,045 - 56,075,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,207,676 - 56,214,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,661,546 - 55,668,282 (-)NCBIMGSCv36mm8
Celera1759,486,915 - 59,493,651 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.14NCBI
Ubxn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89988,051 - 993,221 (-)NCBIGRCr8
mRatBN7.29900,883 - 906,047 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9900,884 - 906,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,347,995 - 1,353,109 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,694,563 - 6,699,666 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,653,032 - 5,658,146 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,995,516 - 11,000,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,995,198 - 11,000,642 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,982,433 - 9,987,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,601,054 - 7,606,148 (+)NCBICelera
Cytogenetic Map9q11NCBI
Ubxn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,456,308 - 4,466,254 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554954,456,182 - 4,465,954 (+)NCBIChiLan1.0ChiLan1.0
UBXN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,838,347 - 8,851,379 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,067,462 - 8,079,687 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,463,259 - 3,475,428 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,410,952 - 4,423,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,410,952 - 4,423,092 (-)Ensemblpanpan1.1panPan2
UBXN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,228,026 - 55,246,333 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,227,729 - 55,245,940 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,956,629 - 54,974,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02055,886,799 - 55,904,984 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,894,672 - 55,904,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,955,806 - 54,966,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,429,034 - 55,446,964 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,627,722 - 55,645,668 (+)NCBIUU_Cfam_GSD_1.0
Ubxn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,253,780 - 215,269,310 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,565,461 - 2,578,624 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,565,473 - 2,578,721 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,175,858 - 4,188,687 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,175,108 - 4,188,649 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,011,232 - 4,024,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubxn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,258,023 - 5,264,989 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,257,960 - 5,265,371 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBXN6
344 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 14 2 2
Low 10 4 3 4 1 9 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000014757   ⟹   ENSSSCP00000014359
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,357,517 - 74,378,592 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044913   ⟹   ENSSSCP00000048710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,364,489 - 74,378,592 (+)Ensembl
RefSeq Acc Id: XM_003123069   ⟹   XP_003123117
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,357,522 - 74,378,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661328   ⟹   XP_005661385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,364,997 - 74,378,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084060   ⟹   XP_020939719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,365,456 - 74,378,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084061   ⟹   XP_020939720
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,367,839 - 74,378,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021084062   ⟹   XP_020939721
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,365,433 - 74,378,600 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003123117   ⟸   XM_003123069
- Peptide Label: isoform X2
- UniProtKB: A0A481A5R8 (UniProtKB/TrEMBL),   A0A8D1YG58 (UniProtKB/TrEMBL),   A0A8D0U3X9 (UniProtKB/TrEMBL),   A0A8D0YYH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661385   ⟸   XM_005661328
- Peptide Label: isoform X1
- UniProtKB: A0A8D0U3X9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939721   ⟸   XM_021084062
- Peptide Label: isoform X4
- UniProtKB: A0A8D1MQX4 (UniProtKB/TrEMBL),   A0A8D1SNE4 (UniProtKB/TrEMBL),   A0A8D0RGG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939719   ⟸   XM_021084060
- Peptide Label: isoform X3
- UniProtKB: A0A8D1SNE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939720   ⟸   XM_021084061
- Peptide Label: isoform X4
- UniProtKB: A0A8D1MQX4 (UniProtKB/TrEMBL),   A0A8D1SNE4 (UniProtKB/TrEMBL),   A0A8D0RGG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048710   ⟸   ENSSSCT00000044913
RefSeq Acc Id: ENSSSCP00000014359   ⟸   ENSSSCT00000014757
Protein Domains
UBX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005035517 UniProtKB/TrEMBL
  ENSSSCG00015043760 UniProtKB/TrEMBL
  ENSSSCG00025021817 UniProtKB/TrEMBL
  ENSSSCG00030041422 UniProtKB/TrEMBL
  ENSSSCG00035020255 UniProtKB/TrEMBL
  ENSSSCG00040040415 UniProtKB/TrEMBL
  ENSSSCG00045019970 UniProtKB/TrEMBL
  ENSSSCG00050044002 UniProtKB/TrEMBL
  ENSSSCG00055027945 UniProtKB/TrEMBL
  ENSSSCG00060002848 UniProtKB/TrEMBL
  ENSSSCG00065030629 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014757 ENTREZGENE
  ENSSSCT00000014757.5 UniProtKB/TrEMBL
  ENSSSCT00000044913.3 UniProtKB/TrEMBL
  ENSSSCT00005056986.1 UniProtKB/TrEMBL
  ENSSSCT00015058835.1 UniProtKB/TrEMBL
  ENSSSCT00025029727.1 UniProtKB/TrEMBL
  ENSSSCT00025029745.1 UniProtKB/TrEMBL
  ENSSSCT00030057572.1 UniProtKB/TrEMBL
  ENSSSCT00030057584.1 UniProtKB/TrEMBL
  ENSSSCT00035026348.1 UniProtKB/TrEMBL
  ENSSSCT00040054395.1 UniProtKB/TrEMBL
  ENSSSCT00040054533.1 UniProtKB/TrEMBL
  ENSSSCT00045034377.1 UniProtKB/TrEMBL
  ENSSSCT00050059914.1 UniProtKB/TrEMBL
  ENSSSCT00050059921.1 UniProtKB/TrEMBL
  ENSSSCT00055055556.1 UniProtKB/TrEMBL
  ENSSSCT00060003520.1 UniProtKB/TrEMBL
  ENSSSCT00060003526.1 UniProtKB/TrEMBL
  ENSSSCT00065041404.1 UniProtKB/TrEMBL
  ENSSSCT00065041416.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2190 UniProtKB/TrEMBL
InterPro PUB-like_dom_sf UniProtKB/TrEMBL
  PUB_domain UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBX_dom UniProtKB/TrEMBL
  UBXN6_PUB UniProtKB/TrEMBL
NCBI Gene UBXN6 ENTREZGENE
PANTHER UBX DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
  UBX-RELATED UniProtKB/TrEMBL
Pfam PUB UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PROSITE UBX UniProtKB/TrEMBL
SMART PUG UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
Superfamily-SCOP SSF143503 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A287AXN7_PIG UniProtKB/TrEMBL
  A0A481A5R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RGG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U3X9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YYH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MQX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SNE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YG58 ENTREZGENE, UniProtKB/TrEMBL
  F1S7L6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94679 ENTREZGENE