PDLIM3 (PDZ and LIM domain 3) - Rat Genome Database

Name: PDLIM3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PDLIM3 (PDZ and LIM domain 3) Sus scrofa

Analyze

Symbol:

PDLIM3

Name:

PDZ and LIM domain 3

RGD ID:

14066927

Description:

ENCODES a protein that exhibits actinin binding (ortholog); cytoskeletal protein binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN actin filament organization (ortholog); heart development (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); autistic disorder (ortholog); cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); Z disc (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

actinin-associated LIM protein 4; alpha-actinin-2-associated LIM protein; LIM; PDZ and LIM domain protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDLIM3 (PDZ and LIM domain 3)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pdlim3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdlim3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdlim3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDLIM3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDLIM3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDLIM3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdlim3 (PDZ and LIM domain 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,513,449 - 46,546,507 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	46,516,178 - 46,546,658 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,297,824 - 53,328,219 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arrhythmogenic right ventricular cardiomyopathy (ISO)

autistic disorder (ISO)

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

familial hypertrophic cardiomyopathy (ISO)

genetic disease (ISO)

Herpes Simplex Encephalitis 1 (ISO)

hypertrophic cardiomyopathy (ISO)

restrictive cardiomyopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA,IEA)

actin filament organization (ISO)

heart development (IBA,IEA,ISO)

muscle structure development (IBA,IEA)

skeletal muscle tissue development (ISO)

Cellular Component

actin cytoskeleton (ISO)

adherens junction (IBA,IEA)

cytoplasm (IEA)

cytosol (IEA)

filamentous actin (IBA,IEA)

stress fiber (IBA,IEA)

Z disc (IBA,IEA,ISO)

Molecular Function

actin binding (IBA,IEA)

actinin binding (ISO)

cytoskeletal protein binding (ISO)

metal ion binding (IEA)

muscle alpha-actinin binding (IBA,IEA)

protein binding (ISO)

structural constituent of muscle (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

PDLIM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,513,449 - 46,546,507 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	46,516,178 - 46,546,658 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,297,824 - 53,328,219 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDLIM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	185,500,660 - 185,535,507 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	185,500,660 - 185,535,507 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	186,421,814 - 186,456,661 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	186,659,899 - 186,693,650 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	186,798,059 - 186,831,794	NCBI
Celera	4	183,749,238 - 183,781,710 (-)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	182,175,438 - 182,209,519 (-)	NCBI		HuRef
CHM1_1	4	186,398,441 - 186,430,909 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	188,844,192 - 188,876,603 (-)	NCBI		T2T-CHM13v2.0

Pdlim3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	46,338,524 - 46,372,672 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	46,338,498 - 46,372,585 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	45,885,487 - 45,919,635 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	45,885,461 - 45,919,548 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	46,970,839 - 47,004,900 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	47,384,302 - 47,418,363 (+)	NCBI		MGSCv36	mm8
Celera	8	48,569,007 - 48,602,415 (+)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	25.86	NCBI

Pdlim3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	53,085,020 - 53,116,495 (-)	NCBI		GRCr8
mRatBN7.2	16	46,352,460 - 46,383,680 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,352,467 - 46,383,657 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	51,754,729 - 51,785,861 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	55,123,468 - 55,154,656 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	50,394,110 - 50,425,252 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	49,543,140 - 49,574,362 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,543,142 - 49,574,390 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	49,271,210 - 49,303,161 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,637,068 - 49,668,802 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	49,637,142 - 49,668,877 (-)	NCBI
Celera	16	44,350,214 - 44,381,388 (-)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

Pdlim3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,546,291 - 23,579,975 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	23,546,291 - 23,579,975 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDLIM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	183,236,644 - 183,270,599 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	183,584,749 - 183,618,714 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	177,664,420 - 177,698,364 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	189,880,930 - 189,914,707 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	189,880,938 - 189,914,707 (-)	Ensembl	panpan1.1		panPan2

PDLIM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	45,111,358 - 45,141,444 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	45,111,372 - 45,140,895 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	45,596,679 - 45,626,635 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	47,324,629 - 47,354,794 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	47,324,611 - 47,354,792 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	45,292,955 - 45,322,927 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	45,905,420 - 45,935,439 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	46,036,947 - 46,067,096 (+)	NCBI		UU_Cfam_GSD_1.0

Pdlim3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	34,235,812 - 34,265,116 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	3,844,743 - 3,874,174 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	3,844,896 - 3,874,168 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	131,443,131 - 131,477,575 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	131,441,674 - 131,477,554 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	111,704,011 - 111,738,337 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdlim3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	16,340,494 - 16,374,208 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	16,341,297 - 16,374,106 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PDLIM3
576 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2			3	2	4		1	1
Low	8	4	3	2		19	2	2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001001637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY543095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU571359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ687039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01117617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000017199 ⟹ ENSSSCP00000016738

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	46,513,449 - 46,546,503 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000022266 ⟹ ENSSSCP00000020628

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	46,514,185 - 46,546,504 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000026298 ⟹ ENSSSCP00000026759

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	46,516,209 - 46,546,491 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000088270 ⟹ ENSSSCP00000072776

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	46,514,184 - 46,546,507 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000095524 ⟹ ENSSSCP00000078453

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	46,514,184 - 46,546,426 (-)	Ensembl

RefSeq Acc Id:

NM_001001637 ⟹ NP_001001637

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	46,516,853 - 46,546,546 (-)	NCBI

Sequence:

show sequence

CTCGGGAGCAGGGATAAAGCTCCTGGGCCGCGGTCCCGCGAGGACACTGCCCCGGGATCAGTTG
GGGCTTTCCCGCCCCGGGACACTCGCTGCACCCCCGCCTGAAGGAAGGCCGTGCACCATGCCCC
AAAACGTGATCCTGCCGGGCCCTGCGCCCTGGGGCTTCAGACTCTCGGGGGGCATAGACTTCAA
CCAGCCCTTGATCATCACCAGGATCACTCCAGGAAGCAAGGCAGCAGCTGCCAACCTGTGTCCT
GGAGATGTCATCCTGGCCATTGATGGCTACGGGACGGAGTCCATGACTCATGCTGATGCACAGG
ACAGGATTAAAGCAGCAGCACACCAGCTGTGTCTCAAAATTGACAGGGCGGAAACTCGCTTATG
GTCTCCACAGGTAACTGAAGATGGGAAGGCTCATCCTTTCAAAATCAACTTAGAATCAGAACCA
CAGGATGTGAACTACTTTGAACACAAGCACAATATTCGGCCCAAACCTTTCATAATCCCAGGCC
GAAGCAGTGGATGCAGTACTCCGTCCGGTATTGACGGTGGCAGTGGACGTAGCACCCCTTCTTC
TGTCAGTACTCTTAGTACTATTTGCCCAGGTGACTTGAAAGTTGCTGCTAAGATGGCCCCTAAC
ATTCCTTTGGAAATGGAACTTCCTGGTGTGAAGATTGTACATGCTCAGTTTAATACACCTATGC
AGTTGTACTCAGATGACAATATTATGGAAACACTTCAGGGTCAGGTTTCAACAGCTCTAGGGGA
AACACCCTCAATGAGTGAACCCACCACTGCCTCCGTGCCCCCACAATCAGATGTGTACCGGATG
CTCCATGACAACCGGAATGAACCTACTCAGCCTCGCCAGTCAGGCTCCTTCAGAGTGCTCCAGG
AACTAGTTAATGATGGCCCTGATGACCGTCCTGCTGGAACTCGGAGTGTAAGAGCTCCAGTTAC
AAAAATCCATGGTGGTGCTGGCGGCACTCAGAAGATGCCACTCTGTGACAAATGTGGGAGTGGC
ATTGTCGGTGCGGTCGTGAAGGCGCGGGACAAGTACAGACATCCAGAGTGCTTCGTATGTGCTG
ACTGCAACCTTAACCTCAAACAAAAGGGCTACTTCTTCGTGGAGGGGGAGCTGTACTGCGAAAC
TCATGCCCGAGCCCGCATGAGGCCCCCAGAGGGCTATGACACAGTCACTCTCTATCCCAAAGCT
TAAATCTTAGGTCAGCGGAGCATGCCCTCACCTCCGTGCACCCTACCCCAGTTAGTGGCTTGGG
CAGAAGTCTAGCCAACTGCCGACTCCCAAT

hide sequence

RefSeq Acc Id:

XM_005671716 ⟹ XP_005671773

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	46,516,178 - 46,546,583 (-)	NCBI

Sequence:

show sequence

GGGAGGGGGAGGGGAGGAGGGGAGGCCGGTGACGTCACTCGGGAGCAGGGATAAAGCTCCTGGG
CCGCGGTCCCGCGAGGACACTGCCCCGGGATCAGAGTGGGCTTTCCCGCCCCGGGACACTCGCT
GCACCCCCGCCTGAGGAAGGCCGTGCACCATGCCCCAAAACGTGATCCTGCCGGGCCCTGCGCC
CTGGGGCTTCAGACTCTCGGGGGGCATAGACTTCAACCAGCCCTTGATCATCACCAGGATCACT
CCAGGAAGCAAGGCAGCAGCTGCCAACCTGTGTCCTGGAGATGTCATCCTGGCCATTGATGGCT
ACGGGACGGAGTCCATGACTCATGCTGATGCACAGGACAGGATTAAAGCAGCAGCACACCAGCT
GTGTCTCAAAATTGACAGGGCGGAAACTCGCTTATGGTCTCCACAGGTAACTGAAGATGGGAAG
GCTCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGAGTTCAAACCCATTGGTGCCGCGC
ACAACAGAAGGGCCCAGCCTTTTGTTGCAGCAGCAAACATTGATGACAAAAGACAGGTAGTGAG
CGCTTCCTATAACTCACCCATTGGGCTCTATTCAACTAGCAATATACAAGATGCGCTTCACGGA
CAGCTGCGGGGTCTCATTCCTAGTTCACCGCAAAATGAACCCACCACTGCCTCCGTGCCCCCAC
AATCAGATGTGTACCGGATGCTCCATGACAACCGGAATGAACCTACTCAGCCTCGCCAGTCAGG
CTCCTTCAGAGTGCTCCAGGAACTAGTTAATGATGGCCCTGATGACCGTCCTGCTGGAACTCGG
AGTGTAAGAGCTCCAGTTACAAAAATCCATGGTGGTGCTGGCGGCACTCAGAAGATGCCACTCT
GTGACAAATGTGGGAGTGGCATTGTCGGTGCGGTCGTGAAGGCGCGGGACAAGTACAGACATCC
AGAGTGCTTCGTATGTGCTGACTGCAACCTTAACCTCAAACAAAAGGGCTACTTCTTCGTGGAG
GGGGAGCTGTACTGCGAAACTCATGCCCGAGCCCGCATGAGGCCCCCAGAGGGCTATGACACAG
TCACTCTCTATCCCAAAGCTTAAATCTTAGGTCAGCGGAGCATGCCCTCACCTCCGTGCACCTA
CCCCAGTTAGTGGCTTGGGCAGAAGTCTAGCCAACTGCCGACTCCCAATCTAGAACCTAGCTTT
TGGATGTTTCTCTTGCTGTATTCTCAGGAGAAGGAATAGGAGGCAGATGCCTGCTGTAACAGAA
ACACACATTCAACTCTTTTTATCTTTGGAGCTAGCGATAATTTAATGACATTTAAAGCAAAAAT
GTTTTGTGTCATACTCCACAGTTTACATTTATATTATGACCACCAAACATGTAAACATCAAGAT
ATTTGGGGGAGTCTAATTGTCTTTCCTTAACAAGTTGACTTTGCAATTGCAGTAAATGCCAAAT
GGCAGTCTTGTATTCTAACACAACCTGCAGGTGTCTGTTATCTGTTTTAACTATTATAGTGCAT
GTCGGGGAGAGATTCCTTAGATCTCTCTAGTTTCATCTTCAAACAGTTATCCCACTGGATGCAA
CATACATAATAAATACATAAAATATTTTTAAAATACCTAATGAAGTGGCACTCAATGAATTCAG
ATGAAATCAACATTCCAGTGAGAAGCTCCACTCATATTTTGTCTTGTACACTAACAACTCAGGT
ATTTTAAGAAAAATGTGGCTTCTTTAGCTTTTAGAACTAATTTACTCTTTCTTATGAGCCCACA
ATTTCTGCTGATAGGAGGGGAAATTTTAAATTTGCAAAAGGTAATGTAGTCTCTTTAAGATTAA
AAGTTTCTTTTGCTTTGAAA

hide sequence

RefSeq Acc Id:

XM_005671717 ⟹ XP_005671774

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	46,516,178 - 46,546,658 (-)	NCBI

Sequence:

show sequence

CGCGGCGGCCGGTGAGCGTCTGTAAACTCCGCGGGTCTGGCGCGTCTTTCTTCCAAAGTTGGAG
CTCTCCTTGGTGGGAGGGGGAGGGGAGGAGGGGAGGCCGGTGACGTCACTCGGGAGCAGGGATA
AAGCTCCTGGGCCGCGGTCCCGCGAGGACACTGCCCCGGGATCAGAGTGGGCTTTCCCGCCCCG
GGACACTCGCTGCACCCCCGCCTGAGGAAGGCCGTGCACCATGCCCCAAAACGTGATCCTGCCG
GGCCCTGCGCCCTGGGGCTTCAGACTCTCGGGGGGCATAGACTTCAACCAGCCCTTGATCATCA
CCAGGATCACTCCAGGAAGCAAGGCAGCAGCTGCCAACCTGTGTCCTGGAGATGTCATCCTGGC
CATTGATGGCTACGGGACGGAGTCCATGACTCATGCTGATGCACAGGACAGGATTAAAGCAGCA
GCACACCAGCTGTGTCTCAAAATTGACAGGGCGGAAACTCGCTTATGGTCTCCACAGGTAACTG
AAGATGGGAAGGCTCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGATGTGAACTACTT
TGAACACAAGCACAATATTCGGCCCAAACCTTTCATAATCCCAGGCCGAAGCAGTGAACCCACC
ACTGCCTCCGTGCCCCCACAATCAGATGTGTACCGGATGCTCCATGACAACCGGAATGAACCTA
CTCAGCCTCGCCAGTCAGGCTCCTTCAGAGTGCTCCAGGAACTAGTTAATGATGGCCCTGATGA
CCGTCCTGCTGGAACTCGGAGTGTAAGAGCTCCAGTTACAAAAATCCATGGTGGTGCTGGCGGC
ACTCAGAAGATGCCACTCTGTGACAAATGTGGGAGTGGCATTGTCGGTGCGGTCGTGAAGGCGC
GGGACAAGTACAGACATCCAGAGTGCTTCGTATGTGCTGACTGCAACCTTAACCTCAAACAAAA
GGGCTACTTCTTCGTGGAGGGGGAGCTGTACTGCGAAACTCATGCCCGAGCCCGCATGAGGCCC
CCAGAGGGCTATGACACAGTCACTCTCTATCCCAAAGCTTAAATCTTAGGTCAGCGGAGCATGC
CCTCACCTCCGTGCACCTACCCCAGTTAGTGGCTTGGGCAGAAGTCTAGCCAACTGCCGACTCC
CAATCTAGAACCTAGCTTTTGGATGTTTCTCTTGCTGTATTCTCAGGAGAAGGAATAGGAGGCA
GATGCCTGCTGTAACAGAAACACACATTCAACTCTTTTTATCTTTGGAGCTAGCGATAATTTAA
TGACATTTAAAGCAAAAATGTTTTGTGTCATACTCCACAGTTTACATTTATATTATGACCACCA
AACATGTAAACATCAAGATATTTGGGGGAGTCTAATTGTCTTTCCTTAACAAGTTGACTTTGCA
ATTGCAGTAAATGCCAAATGGCAGTCTTGTATTCTAACACAACCTGCAGGTGTCTGTTATCTGT
TTTAACTATTATAGTGCATGTCGGGGAGAGATTCCTTAGATCTCTCTAGTTTCATCTTCAAACA
GTTATCCCACTGGATGCAACATACATAATAAATACATAAAATATTTTTAAAATACCTAATGAAG
TGGCACTCAATGAATTCAGATGAAATCAACATTCCAGTGAGAAGCTCCACTCATATTTTGTCTT
GTACACTAACAACTCAGGTATTTTAAGAAAAATGTGGCTTCTTTAGCTTTTAGAACTAATTTAC
TCTTTCTTATGAGCCCACAATTTCTGCTGATAGGAGGGGAAATTTTAAATTTGCAAAAGGTAAT
GTAGTCTCTTTAAGATTAAAAGTTTCTTTTGCTTTGAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001001637	(Get FASTA)	NCBI Sequence Viewer
	XP_005671773	(Get FASTA)	NCBI Sequence Viewer
	XP_005671774	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS55866	(Get FASTA)	NCBI Sequence Viewer
	ACV81740	(Get FASTA)	NCBI Sequence Viewer
	ACV81741	(Get FASTA)	NCBI Sequence Viewer
	ACV81742	(Get FASTA)	NCBI Sequence Viewer
	ACV81743	(Get FASTA)	NCBI Sequence Viewer
	ACV81744	(Get FASTA)	NCBI Sequence Viewer
	ACV81745	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000016738
	ENSSSCP00000016738.2
	ENSSSCP00000020628
	ENSSSCP00000020628.3
	ENSSSCP00000026759.2
	ENSSSCP00000072776
	ENSSSCP00000072776.2
	ENSSSCP00000078453.1
	ENSSSCP00005034788.1
	ENSSSCP00005034807.1
	ENSSSCP00005034813.1
	ENSSSCP00005034833.1
	ENSSSCP00005034852.1
	ENSSSCP00015016154.1
	ENSSSCP00015016205.1
	ENSSSCP00015016310.1
	ENSSSCP00015016498.1
	ENSSSCP00025021017.1
	ENSSSCP00025021020.1
	ENSSSCP00025021034.1
	ENSSSCP00025021063.1
	ENSSSCP00030048102.1
	ENSSSCP00030048109.1
	ENSSSCP00030048117.1
	ENSSSCP00030048138.1
	ENSSSCP00030048151.1
	ENSSSCP00030048154.1
	ENSSSCP00035006418.1
	ENSSSCP00035006422.1
	ENSSSCP00035006428.1
	ENSSSCP00035006433.1
	ENSSSCP00040019548.1
	ENSSSCP00040019555.1
	ENSSSCP00040019583.1
	ENSSSCP00040019643.1
	ENSSSCP00050011546.1
	ENSSSCP00050011562.1
	ENSSSCP00050011581.1
	ENSSSCP00050011591.1
	ENSSSCP00050011613.1
	ENSSSCP00055024028.1
	ENSSSCP00055024065.1
	ENSSSCP00055024126.1
	ENSSSCP00055024181.1
	ENSSSCP00055024220.1
	ENSSSCP00060036458.1
	ENSSSCP00060036471.1
	ENSSSCP00060036487.1
	ENSSSCP00060036508.1
	ENSSSCP00060036530.1
	ENSSSCP00065041082.1
	ENSSSCP00065041086.1
	ENSSSCP00065041092.1
	ENSSSCP00065041097.1
	ENSSSCP00070046233.1
	ENSSSCP00070046234.1
	ENSSSCP00070046235.1
	ENSSSCP00070046236.1
GenBank Protein	Q6QGC0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005671774 ⟸ XM_005671717
- Peptide Label:	isoform X2
- UniProtKB:	D3GGC9 (UniProtKB/TrEMBL), A0A4X1VY45 (UniProtKB/TrEMBL), D3GGD0 (UniProtKB/TrEMBL), A0A8D0YSV4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPQNVILPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESMTHAD AQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFKINLESEPQDVNYFEHKHNIRPKPFII PGRSSEPTTASVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVNDGPDDRPAGTRSVRAPVT KIHGGAGGTQKMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCET HARARMRPPEGYDTVTLYPKA hide sequence

RefSeq Acc Id:	XP_005671773 ⟸ XM_005671716
- Peptide Label:	isoform X1
- UniProtKB:	I3L9B6 (UniProtKB/TrEMBL), A0A4X1VW11 (UniProtKB/TrEMBL), A0A480QG05 (UniProtKB/TrEMBL), D3GGD0 (UniProtKB/TrEMBL), A0A8D0Y906 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPQNVILPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESMTHAD AQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFKINLESEPQEFKPIGAAHNRRAQPFVA AANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTTASVPPQSDVYRMLHD NRNEPTQPRQSGSFRVLQELVNDGPDDRPAGTRSVRAPVTKIHGGAGGTQKMPLCDKCGSGIVG AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARMRPPEGYDTVTLYPKA hide sequence

RefSeq Acc Id:

NP_001001637 ⟸ NM_001001637

- UniProtKB:

Q6QGC0 (UniProtKB/Swiss-Prot), D3GGC5 (UniProtKB/TrEMBL), I3LRM1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPQNVILPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESMTHAD
AQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFKINLESEPQDVNYFEHKHNIRPKPFII
PGRSSGCSTPSGIDGGSGRSTPSSVSTLSTICPGDLKVAAKMAPNIPLEMELPGVKIVHAQFNT
PMQLYSDDNIMETLQGQVSTALGETPSMSEPTTASVPPQSDVYRMLHDNRNEPTQPRQSGSFRV
LQELVNDGPDDRPAGTRSVRAPVTKIHGGAGGTQKMPLCDKCGSGIVGAVVKARDKYRHPECFV
CADCNLNLKQKGYFFVEGELYCETHARARMRPPEGYDTVTLYPKA

hide sequence

RefSeq Acc Id:

ENSSSCP00000072776 ⟸ ENSSSCT00000088270

RefSeq Acc Id:

ENSSSCP00000026759 ⟸ ENSSSCT00000026298

RefSeq Acc Id:

ENSSSCP00000020628 ⟸ ENSSSCT00000022266

RefSeq Acc Id:

ENSSSCP00000016738 ⟸ ENSSSCT00000017199

RefSeq Acc Id:

ENSSSCP00000078453 ⟸ ENSSSCT00000095524

Protein Domains

LIM zinc-binding PDZ

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015796	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00005034876	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00015030376	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00025036042	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00030074128	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00035014492	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00040034605	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00050020686	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00055015298	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00060060611	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00065068360	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00070027183	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000017199	ENTREZGENE
	ENSSSCT00000017199.4	UniProtKB/Swiss-Prot
	ENSSSCT00000022266	ENTREZGENE
	ENSSSCT00000022266.4	UniProtKB/TrEMBL
	ENSSSCT00000026298.4	UniProtKB/TrEMBL
	ENSSSCT00000088270	ENTREZGENE
	ENSSSCT00000088270.2	UniProtKB/TrEMBL
	ENSSSCT00000095524.1	UniProtKB/TrEMBL
	ENSSSCT00005056527.1	UniProtKB/Swiss-Prot
	ENSSSCT00005056559.1	UniProtKB/Swiss-Prot
	ENSSSCT00005056568.1	UniProtKB/TrEMBL
	ENSSSCT00005056588.1	UniProtKB/TrEMBL
	ENSSSCT00005056621.1	UniProtKB/TrEMBL
	ENSSSCT00015040885.1	UniProtKB/TrEMBL
	ENSSSCT00015040998.1	UniProtKB/Swiss-Prot
	ENSSSCT00015041295.1	UniProtKB/TrEMBL
	ENSSSCT00015041811.1	UniProtKB/TrEMBL
	ENSSSCT00025049146.1	UniProtKB/TrEMBL
	ENSSSCT00025049163.1	UniProtKB/Swiss-Prot
	ENSSSCT00025049200.1	UniProtKB/TrEMBL
	ENSSSCT00025049277.1	UniProtKB/TrEMBL
	ENSSSCT00030103947.1	UniProtKB/TrEMBL
	ENSSSCT00030103959.1	UniProtKB/Swiss-Prot
	ENSSSCT00030103970.1	UniProtKB/TrEMBL
	ENSSSCT00030103995.1	UniProtKB/TrEMBL
	ENSSSCT00030104015.1	UniProtKB/TrEMBL
	ENSSSCT00030104021.1	UniProtKB/TrEMBL
	ENSSSCT00035018372.1	UniProtKB/TrEMBL
	ENSSSCT00035018380.1	UniProtKB/Swiss-Prot
	ENSSSCT00035018392.1	UniProtKB/TrEMBL
	ENSSSCT00035018399.1	UniProtKB/TrEMBL
	ENSSSCT00040046642.1	UniProtKB/TrEMBL
	ENSSSCT00040046658.1	UniProtKB/Swiss-Prot
	ENSSSCT00040046726.1	UniProtKB/TrEMBL
	ENSSSCT00040046852.1	UniProtKB/TrEMBL
	ENSSSCT00050027919.1	UniProtKB/Swiss-Prot
	ENSSSCT00050027951.1	UniProtKB/TrEMBL
	ENSSSCT00050028002.1	UniProtKB/TrEMBL
	ENSSSCT00050028021.1	UniProtKB/TrEMBL
	ENSSSCT00050028074.1	UniProtKB/TrEMBL
	ENSSSCT00055030160.1	UniProtKB/TrEMBL
	ENSSSCT00055030210.1	UniProtKB/Swiss-Prot
	ENSSSCT00055030292.1	UniProtKB/TrEMBL
	ENSSSCT00055030364.1	UniProtKB/TrEMBL
	ENSSSCT00055030423.1	UniProtKB/TrEMBL
	ENSSSCT00060084157.1	UniProtKB/Swiss-Prot
	ENSSSCT00060084186.1	UniProtKB/Swiss-Prot
	ENSSSCT00060084225.1	UniProtKB/TrEMBL
	ENSSSCT00060084260.1	UniProtKB/TrEMBL
	ENSSSCT00060084316.1	UniProtKB/TrEMBL
	ENSSSCT00065093877.1	UniProtKB/TrEMBL
	ENSSSCT00065093889.1	UniProtKB/Swiss-Prot
	ENSSSCT00065093899.1	UniProtKB/TrEMBL
	ENSSSCT00065093914.1	UniProtKB/TrEMBL
	ENSSSCT00070054507.1	UniProtKB/Swiss-Prot
	ENSSSCT00070054508.1	UniProtKB/TrEMBL
	ENSSSCT00070054509.1	UniProtKB/TrEMBL
	ENSSSCT00070054510.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	DUF4749	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zasp-like_motif	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:414421	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	PDLIM3	ENTREZGENE
PANTHER	PDZ AND LIM DOMAIN PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF4749	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00735	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A480QG05	ENTREZGENE
	A0A4X1VRL1_PIG	UniProtKB/TrEMBL
	A0A4X1VW11	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VY45	ENTREZGENE
	A0A8D0JY40_PIG	UniProtKB/TrEMBL
	A0A8D0Y906	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0YSV4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1LP32_PIG	UniProtKB/TrEMBL
	A0A8D1QS80_PIG	UniProtKB/TrEMBL
	D3GGC5	ENTREZGENE, UniProtKB/TrEMBL
	D3GGC9	ENTREZGENE, UniProtKB/TrEMBL
	D3GGD0	ENTREZGENE, UniProtKB/TrEMBL
	I3L9B6	ENTREZGENE
	I3LRM1	ENTREZGENE, UniProtKB/TrEMBL
	PDLI3_PIG	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A0A480QG05	UniProtKB/TrEMBL
	A0A4X1VY45	UniProtKB/TrEMBL
	A0A8W4FJH1	UniProtKB/TrEMBL
	I3L9B6	UniProtKB/TrEMBL
VGNC ID	VGNC:95945	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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