C5H12orf75 (chromosome 5 C12orf75 homolog)

Gene: C5H12orf75 (chromosome 5 C12orf75 homolog) Sus scrofa

Analyze

Symbol:

C5H12orf75 (Ensembl: C12orf75)

Name:

chromosome 5 C12orf75 homolog

RGD ID:

14066079

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

overexpressed in colon carcinoma 1 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	14,720,120 - 14,755,815 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	14,720,117 - 14,755,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,186,667 - 15,207,603 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

C5H12orf75
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	14,720,120 - 14,755,815 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	14,720,117 - 14,755,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,186,667 - 15,207,603 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C12orf75
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	105,330,691 - 105,371,518 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	105,235,290 - 105,396,097 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	105,724,469 - 105,765,296 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	104,154,183 - 104,289,427 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	105,388,672 - 105,429,552 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	102,783,830 - 102,824,712 (+)	NCBI		HuRef
CHM1_1	12	105,690,112 - 105,730,974 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	105,292,506 - 105,333,339 (+)	NCBI		T2T-CHM13v2.0

1500009L16Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	83,558,560 - 83,598,626 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	83,558,729 - 83,598,626 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	83,722,693 - 83,762,762 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	83,722,865 - 83,762,762 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	83,185,610 - 83,225,507 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	83,152,664 - 83,192,310 (+)	NCBI		MGSCv36	mm8
Celera	10	85,709,974 - 85,750,013 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.3	NCBI

C7h12orf75
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	21,902,745 - 21,945,704 (-)	NCBI		GRCr8
mRatBN7.2	7	20,015,102 - 20,058,448 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	20,015,102 - 20,057,975 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	21,984,560 - 22,027,383 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	24,147,308 - 24,190,130 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	23,924,313 - 23,967,134 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	25,737,979 - 26,180,359 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	25,737,979 - 25,743,537 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	25,873,245 - 25,878,804 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	22,182,219 - 22,200,385 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	17,219,692 - 17,263,022 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

CUNH12orf75
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	39,595,769 - 39,622,859 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	39,595,762 - 39,623,671 (+)	NCBI	ChiLan1.0	ChiLan1.0

C10H12orf75
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	113,401,052 - 113,442,206 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	113,397,436 - 113,438,868 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	102,913,263 - 102,954,656 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

C10H12orf75
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	33,093,491 - 33,100,926 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	33,013,174 - 33,050,168 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	33,935,462 - 33,972,458 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	10	33,670,306 - 33,707,315 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	33,954,607 - 33,991,564 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	34,147,987 - 34,184,951 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH12orf75
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	100,537,787 - 100,580,873 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	144,436,350 - 144,478,593 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH12orf75
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	3,708,392 - 3,738,404 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	3,708,392 - 3,738,426 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C5H12orf75
1073 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2	3		3				2	1
Low	8	1	3	2	1	23	2	1	2
Below cutoff					1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021091585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU457695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01057452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000039007 ⟹ ENSSSCP00000045953

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	14,720,120 - 14,755,815 (-)	Ensembl

RefSeq Acc Id:

XM_021091585 ⟹ XP_020947244

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	14,720,117 - 14,755,750 (-)	NCBI

Sequence:

show sequence

GGTGGGTCTGGTGGGGTCTGGTAGGGTCCAGAACCCGGGAGCAGAGCTGGGCGGGCGGGGCGAG
GTGGGGCAGGGGCGAGGGGTGCCCAGCGGTTTCCGCCCGGCCCCGCCCTGTTTGGCCCTGCCCA
GGATCTGCGGCTGCCAGCTCCAGAGAGCAGCTTCCCTGGCCGGAGGCGCGATGGGCTGCGGGAA
CTCCACTGCCACCAGCGCGGGCGCGAGCCAAGGCCCTGCAGGAGCAGCTAAAGATGTAACAGAA
GACTCGATAGCAGAAGATGACAAGAGGAGAAACTACGGAGGGGTGTATGTTGGTCTACCATCTG
AAGCCGTCAATATGGTATCCAGCCAAACAAAGACGGTACGAAAAAATTAGAAGAAAATATCATG
ACTCAATCAGCAAGAGCTTGCTCATCAAGATCTGGATGGGATTTCGGCGTCGTGGGACATTGTG
ACGTGCACAGACATTTCCAAGGAAATTCCCAGTTTATAGTTAATGCCATGGGTACACATTGAAT
GTTACAGGACTAGAAAGGAATGGGTTGAACAGTACACTCATACCTGGCACTTGCCATGGTTCAC
CTGTGCAAGACGAGCTCACAAGCGGTTCTTGACCAGCTGGCCGCTGGCTCCTAGCGGTCATCAC
AGCTCGTGAAGATCATGTCTTTTTCATTGATACTTTTTGGATCGTTTTTATATAACAAAATCCT
TCATCTATTTATAACTTAAAATAAGGCACGGTAAATGAATTACCCAAAGTAATATATTTGTTCT
CTTTCACTATTTCTATTTCATGTTAATTGTCAGCTGTCAAAGTGATTCTAATGGTTCGCTCTTT
TTTTACTATTTGTTTTTCAGCTTTATTTAAATGTCAGACGATTTTCTTTATTAAGGATGGTGTT
ATTACATTGTAACACTTAAACTGCTGAGATTTGCATGCTATACCTACCATTTGATTTACTTCCT
ATTTTCTTTAGTCAAAGGCTTATTATGTAACTGCGAATACTTCATAGCCACGAGGCTCCCATTT
CTACTTGTGTGTGATCAGAGCATTTCATCATGTTAATTCTATACTGTTTTCAAGAACTTGTCAC
TGATGGTTAGTGGGATATTTGGGAATTTCTTACTTTGATAGTGAACATGCATCCACTTCGTACT
GCACTGTAAATCACTTAATGTGCCAATGTATTTCAATAATTAAAAGTTTTTACCCCCTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020947244	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045953
	ENSSSCP00000045953.1
	ENSSSCP00015032652.1
	ENSSSCP00025011867.1
	ENSSSCP00030035158.1
	ENSSSCP00035022561.1
	ENSSSCP00040024668.1
	ENSSSCP00045013660.1
	ENSSSCP00050034928.1
	ENSSSCP00060017471.1
	ENSSSCP00065029228.1
	ENSSSCP00070052390.1

RefSeq Acc Id:	XP_020947244 ⟸ XM_021091585
- UniProtKB:	A0A4X1WDY0 (UniProtKB/TrEMBL), A0A287APY4 (UniProtKB/TrEMBL), A0A8D1EMP8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGNSTATSAGASQGPAGAAKDVTEDSIAEDDKRRNYGGVYVGLPSEAVNMVSSQTKTVRKN hide sequence

RefSeq Acc Id:

ENSSSCP00000045953 ⟸ ENSSSCT00000039007

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000031661	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015060188	UniProtKB/TrEMBL
	ENSSSCG00025020644	UniProtKB/TrEMBL
	ENSSSCG00030055293	UniProtKB/TrEMBL
	ENSSSCG00035042167	UniProtKB/TrEMBL
	ENSSSCG00040043835	UniProtKB/TrEMBL
	ENSSSCG00045011716	UniProtKB/TrEMBL
	ENSSSCG00050059729	UniProtKB/TrEMBL
	ENSSSCG00060030522	UniProtKB/TrEMBL
	ENSSSCG00065049140	UniProtKB/TrEMBL
	ENSSSCG00070030525	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000039007	ENTREZGENE
	ENSSSCT00000039007.1	UniProtKB/TrEMBL
	ENSSSCT00015080747.1	UniProtKB/TrEMBL
	ENSSSCT00025028057.1	UniProtKB/TrEMBL
	ENSSSCT00030077019.1	UniProtKB/TrEMBL
	ENSSSCT00035056064.1	UniProtKB/TrEMBL
	ENSSSCT00040058913.1	UniProtKB/TrEMBL
	ENSSSCT00045019899.1	UniProtKB/TrEMBL
	ENSSSCT00050081373.1	UniProtKB/TrEMBL
	ENSSSCT00060041228.1	UniProtKB/TrEMBL
	ENSSSCT00065067265.1	UniProtKB/TrEMBL
	ENSSSCT00070061446.1	UniProtKB/TrEMBL
InterPro	OCC1	UniProtKB/TrEMBL
NCBI Gene	C5H12orf75	ENTREZGENE
PANTHER	OVEREXPRESSED IN COLON CARCINOMA 1 PROTEIN	UniProtKB/TrEMBL
	PTHR38502	UniProtKB/TrEMBL
Pfam	OCC1	UniProtKB/TrEMBL
UniProt	A0A287APY4	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1WDY0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XII3_PIG	UniProtKB/TrEMBL
	A0A8D1EMP8	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86048	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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