ITPA (inosine triphosphatase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ITPA (inosine triphosphatase) Sus scrofa
Analyze
Symbol: ITPA
Name: inosine triphosphatase
RGD ID: 14064256
Description: ENCODES a protein that exhibits dITP diphosphatase activity (inferred); hydrolase activity (inferred); identical protein binding (inferred); INVOLVED IN chromosome organization (ortholog); ITP catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH anemia (ortholog); anodontia (ortholog); Chemotherapy-Induced Febrile Neutropenia (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inosine triphosphate pyrophosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,455,459 - 32,474,784 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,458,351 - 32,474,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,828,072 - 36,835,384 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ITPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,455,459 - 32,474,784 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,458,351 - 32,474,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,828,072 - 36,835,384 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,204,065 - 3,227,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,208,868 - 3,223,870 (+)EnsemblGRCh38hg38GRCh38
GRCh37203,189,322 - 3,208,095 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,138,056 - 3,152,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 34203,138,055 - 3,152,504NCBI
Celera203,252,018 - 3,266,469 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,137,390 - 3,152,825 (+)NCBIHuRef
CHM1_1203,189,574 - 3,204,578 (+)NCBICHM1_1
T2T-CHM13v2.0203,234,474 - 3,258,399 (+)NCBIT2T-CHM13v2.0
Itpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,506,702 - 130,523,534 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,509,530 - 130,523,534 (+)EnsemblGRCm39 Ensembl
GRCm382130,664,692 - 130,681,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,667,610 - 130,681,614 (+)EnsemblGRCm38mm10GRCm38
MGSCv372130,493,577 - 130,507,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362130,359,282 - 130,373,055 (+)NCBIMGSCv36mm8
Celera2131,892,647 - 131,906,412 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.24NCBI
Itpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,338,549 - 138,350,329 (+)NCBIGRCr8
mRatBN7.23117,885,464 - 117,897,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,885,099 - 117,897,249 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,779,700 - 121,791,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,377,306 - 130,389,249 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,035,835 - 128,047,749 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,209,611 - 123,221,266 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,209,608 - 123,221,269 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,707,739 - 129,719,394 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,298,330 - 118,310,110 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3116,696,317 - 116,708,064 (+)NCBICelera
Cytogenetic Map3q36NCBI
Itpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,107,380 - 14,121,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,106,786 - 14,121,975 (+)NCBIChiLan1.0ChiLan1.0
ITPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,175,151 - 4,190,553 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,171,972 - 4,187,379 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,295,075 - 3,309,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1203,056,395 - 3,074,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,056,395 - 3,070,924 (+)Ensemblpanpan1.1panPan2
ITPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,070,980 - 18,081,815 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,064,983 - 18,082,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,899,408 - 17,910,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02418,489,683 - 18,500,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2418,484,647 - 18,500,667 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,083,389 - 18,094,040 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,195,716 - 18,206,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02418,523,354 - 18,534,007 (-)NCBIUU_Cfam_GSD_1.0
Itpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,068,324 - 167,080,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648515,497,822 - 15,511,992 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648515,499,688 - 15,511,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,873,231 - 33,893,329 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl233,873,339 - 33,893,556 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607110,617,572 - 10,634,540 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247414,312,360 - 4,325,825 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247414,312,363 - 4,341,996 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ITPA
614 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 3 5 1 19 2 3 3
Low 2 2 1 4
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000042695   ⟹   ENSSSCP00000052706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,458,238 - 32,474,784 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046693   ⟹   ENSSSCP00000054471
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,455,459 - 32,474,774 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052062   ⟹   ENSSSCP00000052903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,455,459 - 32,474,774 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067204   ⟹   ENSSSCP00000068639
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,455,459 - 32,474,748 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086275   ⟹   ENSSSCP00000072239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,460,816 - 32,474,786 (-)Ensembl
RefSeq Acc Id: XM_005672791   ⟹   XP_005672848
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,466,850 - 32,474,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985159   ⟹   XP_013840613
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,460,808 - 32,474,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077577   ⟹   XP_020933236
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,458,351 - 32,474,827 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005672848 (Get FASTA)   NCBI Sequence Viewer  
  XP_013840613 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933236 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000052706.1
  ENSSSCP00000052903.3
  ENSSSCP00000054471
  ENSSSCP00000054471.2
  ENSSSCP00000068639.1
  ENSSSCP00005043616.1
  ENSSSCP00005043666.1
  ENSSSCP00005043683.1
  ENSSSCP00005043693.1
  ENSSSCP00005043704.1
  ENSSSCP00015034186.1
  ENSSSCP00015034264.1
  ENSSSCP00015034477.1
  ENSSSCP00015034525.1
  ENSSSCP00025026739.1
  ENSSSCP00025026803.1
  ENSSSCP00025026916.1
  ENSSSCP00025027002.1
  ENSSSCP00030022581.1
  ENSSSCP00030022595.1
  ENSSSCP00030022614.1
  ENSSSCP00030022623.1
  ENSSSCP00035021693.1
  ENSSSCP00035021696.1
  ENSSSCP00035021699.1
  ENSSSCP00035021704.1
  ENSSSCP00040015338.1
  ENSSSCP00040015376.1
  ENSSSCP00040015426.1
  ENSSSCP00040015467.1
  ENSSSCP00045002760.1
  ENSSSCP00045002777.1
  ENSSSCP00045002800.1
  ENSSSCP00045002814.1
  ENSSSCP00050035374.1
  ENSSSCP00050035377.1
  ENSSSCP00050035381.1
  ENSSSCP00050035386.1
  ENSSSCP00050035387.1
  ENSSSCP00055021015.1
  ENSSSCP00055021080.1
  ENSSSCP00055021180.1
  ENSSSCP00055021235.1
  ENSSSCP00060007317.1
  ENSSSCP00060007321.1
  ENSSSCP00060007328.1
  ENSSSCP00060007349.1
  ENSSSCP00060007353.1
  ENSSSCP00065037258.1
  ENSSSCP00065037272.1
  ENSSSCP00065037290.1
  ENSSSCP00065037295.1
  ENSSSCP00070038041.1
  ENSSSCP00070038050.1
  ENSSSCP00070038054.1
  ENSSSCP00070038058.1
  ENSSSCP00070038063.1
RefSeq Acc Id: XP_020933236   ⟸   XM_021077577
- Peptide Label: isoform X1
- UniProtKB: A0A287BD51 (UniProtKB/TrEMBL),   A0A8D1QFV9 (UniProtKB/TrEMBL),   A0A480W0Q1 (UniProtKB/TrEMBL),   A0A8D0WN50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840613   ⟸   XM_013985159
- Peptide Label: isoform X2
- UniProtKB: A0A480URB5 (UniProtKB/TrEMBL),   A0A4X1V8U2 (UniProtKB/TrEMBL),   A0A8D1U208 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672848   ⟸   XM_005672791
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000052903   ⟸   ENSSSCT00000052062
RefSeq Acc Id: ENSSSCP00000052706   ⟸   ENSSSCT00000042695
RefSeq Acc Id: ENSSSCP00000072239   ⟸   ENSSSCT00000086275
RefSeq Acc Id: ENSSSCP00000054471   ⟸   ENSSSCT00000046693
RefSeq Acc Id: ENSSSCP00000068639   ⟸   ENSSSCT00000067204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035995 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043458 UniProtKB/TrEMBL
  ENSSSCG00015062850 UniProtKB/TrEMBL
  ENSSSCG00025046154 UniProtKB/TrEMBL
  ENSSSCG00030035847 UniProtKB/TrEMBL
  ENSSSCG00035040621 UniProtKB/TrEMBL
  ENSSSCG00040027497 UniProtKB/TrEMBL
  ENSSSCG00045002754 UniProtKB/TrEMBL
  ENSSSCG00050060505 UniProtKB/TrEMBL
  ENSSSCG00055013347 UniProtKB/TrEMBL
  ENSSSCG00060013850 UniProtKB/TrEMBL
  ENSSSCG00065062137 UniProtKB/TrEMBL
  ENSSSCG00070022708 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042695.3 UniProtKB/TrEMBL
  ENSSSCT00000046693 ENTREZGENE
  ENSSSCT00000046693.2 UniProtKB/TrEMBL
  ENSSSCT00000052062.3 UniProtKB/TrEMBL
  ENSSSCT00000067204.1 UniProtKB/TrEMBL
  ENSSSCT00005070047.1 UniProtKB/TrEMBL
  ENSSSCT00005070109.1 UniProtKB/TrEMBL
  ENSSSCT00005070134.1 UniProtKB/TrEMBL
  ENSSSCT00005070149.1 UniProtKB/TrEMBL
  ENSSSCT00005070166.1 UniProtKB/TrEMBL
  ENSSSCT00015084308.1 UniProtKB/TrEMBL
  ENSSSCT00015084455.1 UniProtKB/TrEMBL
  ENSSSCT00015084912.1 UniProtKB/TrEMBL
  ENSSSCT00015084996.1 UniProtKB/TrEMBL
  ENSSSCT00025062849.1 UniProtKB/TrEMBL
  ENSSSCT00025062992.1 UniProtKB/TrEMBL
  ENSSSCT00025063201.1 UniProtKB/TrEMBL
  ENSSSCT00025063370.1 UniProtKB/TrEMBL
  ENSSSCT00030049762.1 UniProtKB/TrEMBL
  ENSSSCT00030049787.1 UniProtKB/TrEMBL
  ENSSSCT00030049817.1 UniProtKB/TrEMBL
  ENSSSCT00030049830.1 UniProtKB/TrEMBL
  ENSSSCT00035053956.1 UniProtKB/TrEMBL
  ENSSSCT00035053964.1 UniProtKB/TrEMBL
  ENSSSCT00035053975.1 UniProtKB/TrEMBL
  ENSSSCT00035053984.1 UniProtKB/TrEMBL
  ENSSSCT00040036892.1 UniProtKB/TrEMBL
  ENSSSCT00040036976.1 UniProtKB/TrEMBL
  ENSSSCT00040037107.1 UniProtKB/TrEMBL
  ENSSSCT00040037189.1 UniProtKB/TrEMBL
  ENSSSCT00045004328.1 UniProtKB/TrEMBL
  ENSSSCT00045004349.1 UniProtKB/TrEMBL
  ENSSSCT00045004380.1 UniProtKB/TrEMBL
  ENSSSCT00045004396.1 UniProtKB/TrEMBL
  ENSSSCT00050082437.1 UniProtKB/TrEMBL
  ENSSSCT00050082446.1 UniProtKB/TrEMBL
  ENSSSCT00050082452.1 UniProtKB/TrEMBL
  ENSSSCT00050082464.1 UniProtKB/TrEMBL
  ENSSSCT00050082467.1 UniProtKB/TrEMBL
  ENSSSCT00055026447.1 UniProtKB/TrEMBL
  ENSSSCT00055026524.1 UniProtKB/TrEMBL
  ENSSSCT00055026642.1 UniProtKB/TrEMBL
  ENSSSCT00055026707.1 UniProtKB/TrEMBL
  ENSSSCT00060018272.1 UniProtKB/TrEMBL
  ENSSSCT00060018283.1 UniProtKB/TrEMBL
  ENSSSCT00060018292.1 UniProtKB/TrEMBL
  ENSSSCT00060018327.1 UniProtKB/TrEMBL
  ENSSSCT00060018337.1 UniProtKB/TrEMBL
  ENSSSCT00065085277.1 UniProtKB/TrEMBL
  ENSSSCT00065085302.1 UniProtKB/TrEMBL
  ENSSSCT00065085331.1 UniProtKB/TrEMBL
  ENSSSCT00065085341.1 UniProtKB/TrEMBL
  ENSSSCT00070045144.1 UniProtKB/TrEMBL
  ENSSSCT00070045153.1 UniProtKB/TrEMBL
  ENSSSCT00070045157.1 UniProtKB/TrEMBL
  ENSSSCT00070045161.1 UniProtKB/TrEMBL
  ENSSSCT00070045167.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.950.10 UniProtKB/TrEMBL
InterPro Ham1p-like UniProtKB/TrEMBL
  ITPase UniProtKB/TrEMBL
  ITPase-like_fam UniProtKB/TrEMBL
KEGG Report ssc:100157088 UniProtKB/TrEMBL
NCBI Gene ITPA ENTREZGENE
PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE UniProtKB/TrEMBL
  PTHR11067 UniProtKB/TrEMBL
Pfam Ham1p_like UniProtKB/TrEMBL
Superfamily-SCOP SSF52972 UniProtKB/TrEMBL
UniProt A0A287B9Y7_PIG UniProtKB/TrEMBL
  A0A287BD51 ENTREZGENE
  A0A480URB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480W0Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V5I7_PIG UniProtKB/TrEMBL
  A0A4X1V8U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V8U5_PIG UniProtKB/TrEMBL
  A0A4X1V9W4_PIG UniProtKB/TrEMBL
  A0A4X1VB98_PIG UniProtKB/TrEMBL
  A0A5G2RD68_PIG UniProtKB/TrEMBL
  A0A8D0M1N1_PIG UniProtKB/TrEMBL
  A0A8D0M1Q0_PIG UniProtKB/TrEMBL
  A0A8D0M255_PIG UniProtKB/TrEMBL
  A0A8D0U8W3_PIG UniProtKB/TrEMBL
  A0A8D0USW4_PIG UniProtKB/TrEMBL
  A0A8D0WMR5_PIG UniProtKB/TrEMBL
  A0A8D0WN50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZPW8_PIG UniProtKB/TrEMBL
  A0A8D0ZZA1_PIG UniProtKB/TrEMBL
  A0A8D1C716_PIG UniProtKB/TrEMBL
  A0A8D1GE89_PIG UniProtKB/TrEMBL
  A0A8D1N903_PIG UniProtKB/TrEMBL
  A0A8D1QFV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T106_PIG UniProtKB/TrEMBL
  A0A8D1T3F2_PIG UniProtKB/TrEMBL
  A0A8D1U208 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZL17_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B852 UniProtKB/TrEMBL
  A0A287BD51 UniProtKB/TrEMBL
VGNC ID VGNC:96384 ENTREZGENE