CRTAM (cytotoxic and regulatory T cell molecule) - Rat Genome Database

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Gene: CRTAM (cytotoxic and regulatory T cell molecule) Sus scrofa
Analyze
Symbol: CRTAM
Name: cytotoxic and regulatory T cell molecule
RGD ID: 14064081
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN activated T cell proliferation (ortholog); detection of stimulus (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH Dwarfism (ortholog); schizophrenia (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytotoxic and regulatory T-cell molecule
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,783,731 - 49,811,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,782,166 - 49,811,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,129,405 - 55,156,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30086883  


Genomics

Comparative Map Data
CRTAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,783,731 - 49,811,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,782,166 - 49,811,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,129,405 - 55,156,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRTAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11122,838,500 - 122,872,643 (+)EnsemblGRCh38hg38GRCh38
GRCh3811122,838,419 - 122,872,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711122,709,208 - 122,743,351 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611122,214,465 - 122,248,557 (+)NCBINCBI36hg18NCBI36
Celera11119,868,568 - 119,902,622 (+)NCBI
Cytogenetic Map11q24.1NCBI
HuRef11118,652,105 - 118,686,168 (+)NCBIHuRef
CHM1_111122,595,116 - 122,629,182 (+)NCBICHM1_1
Crtam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,884,094 - 40,915,924 (-)NCBIGRCm39mm39
GRCm39 Ensembl940,880,987 - 40,915,924 (-)Ensembl
GRCm38940,972,798 - 41,004,628 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl940,969,691 - 41,004,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37940,780,881 - 40,812,669 (-)NCBIGRCm37mm9NCBIm37
MGSCv36940,723,867 - 40,755,655 (-)NCBImm8
Celera938,200,659 - 38,232,057 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.79NCBI
Crtam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2841,340,117 - 41,377,343 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl841,340,837 - 41,377,343 (-)Ensembl
Rnor_6.0845,152,584 - 45,216,082 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl845,153,308 - 45,215,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0843,681,605 - 43,694,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0843,634,852 - 43,653,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,943,971 - 43,981,609 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1843,953,456 - 43,984,145 (-)NCBI
Celera840,939,600 - 40,975,292 (-)NCBICelera
Cytogenetic Map8q22NCBI
Crtam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541223,675,906 - 23,709,262 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541223,676,171 - 23,706,250 (+)NCBIChiLan1.0ChiLan1.0
CRTAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111121,591,738 - 121,625,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,591,738 - 121,625,738 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011117,671,581 - 117,705,818 (+)NCBIMhudiblu_PPA_v0panPan3
CRTAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1511,458,360 - 11,485,469 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl511,458,008 - 11,485,448 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha511,513,935 - 11,544,437 (-)NCBI
ROS_Cfam_1.0511,408,765 - 11,439,292 (-)NCBI
UMICH_Zoey_3.1511,512,278 - 11,542,814 (-)NCBI
UNSW_CanFamBas_1.0511,451,291 - 11,481,815 (-)NCBI
UU_Cfam_GSD_1.0511,489,452 - 11,520,016 (-)NCBI
Crtam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947104,481,329 - 104,490,360 (+)NCBI
SpeTri2.0NW_0049365427,402,879 - 7,411,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRTAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,233,767 - 114,265,780 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,234,357 - 114,265,994 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604311,860,131 - 11,886,947 (-)NCBIVero_WHO_p1.0
Crtam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248802,229,201 - 2,240,068 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 2
Low 8 2 5 1 3
Below cutoff 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016503   ⟹   ENSSSCP00000016060
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl949,783,909 - 49,811,313 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000050387   ⟹   ENSSSCP00000037057
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl949,784,044 - 49,811,295 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087422   ⟹   ENSSSCP00000070025
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl949,783,731 - 49,810,068 (+)Ensembl
RefSeq Acc Id: XM_021063021   ⟹   XP_020918680
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1949,783,990 - 49,811,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063022   ⟹   XP_020918681
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1949,782,166 - 49,811,314 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020918680 (Get FASTA)   NCBI Sequence Viewer  
  XP_020918681 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69619 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020918681   ⟸   XM_021063022
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020918680   ⟸   XM_021063021
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000037057   ⟸   ENSSSCT00000050387
RefSeq Acc Id: ENSSSCP00000016060   ⟸   ENSSSCT00000016503
RefSeq Acc Id: ENSSSCP00000070025   ⟸   ENSSSCT00000087422
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024805 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016060 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000037057 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000070025 UniProtKB/TrEMBL
  ENSSSCP00070041838 UniProtKB/TrEMBL
  ENSSSCP00070041839 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016503 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000050387 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000087422 UniProtKB/TrEMBL
  ENSSSCT00070049541 UniProtKB/TrEMBL
  ENSSSCT00070049542 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene CRTAM ENTREZGENE
Pfam C2-set_2 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287A004_PIG UniProtKB/TrEMBL
  A0A4X1VJ53_PIG UniProtKB/TrEMBL
  A0A4X1VLL7_PIG UniProtKB/TrEMBL
  A0A5G2R0X4_PIG UniProtKB/TrEMBL
  F1S9Q6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87005 ENTREZGENE