LOC100152712 (olfactory receptor 4N5)

Gene: LOC100152712 (olfactory receptor 4N5) Sus scrofa

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Symbol:

LOC100152712

Name:

olfactory receptor 4N5

RGD ID:

14062434

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	79,379,088 - 79,380,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	83,904,483 - 83,949,871 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100152712
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	79,379,088 - 79,380,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	83,904,483 - 83,949,871 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR4N5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	20,138,820 - 20,145,471 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	20,138,820 - 20,145,471 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	20,606,979 - 20,613,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	19,681,735 - 19,682,661 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	19,681,734 - 19,682,661	NCBI
Celera	14	473,483 - 474,409 (+)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	733,765 - 734,691 (+)	NCBI		HuRef
CHM1_1	14	20,612,963 - 20,613,889 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	14,333,608 - 14,340,261 (+)	NCBI		T2T-CHM13v2.0

Or4n5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	50,131,715 - 50,139,398 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	50,131,715 - 50,139,456 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	49,894,258 - 49,901,941 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	49,894,258 - 49,901,999 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	50,513,933 - 50,521,616 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	48,816,209 - 48,823,892 (-)	NCBI		MGSCv36	mm8
Celera	14	46,106,005 - 46,113,652 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	25.87	NCBI

Or4n5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,647,331 - 25,648,257 (-)	NCBI		GRCr8
mRatBN7.2	15	23,167,750 - 23,168,676 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	23,166,235 - 23,174,805 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	25,945,006 - 25,945,932 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	26,906,359 - 26,907,285 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	25,153,556 - 25,154,482 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	26,780,039 - 26,780,965 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,780,039 - 26,780,965 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	30,704,833 - 30,705,759 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	26,395,468 - 26,396,394 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	26,411,167 - 26,412,094 (-)	NCBI
Celera	15	23,530,039 - 23,530,965 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

LOC100969123
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	21,679,596 - 21,680,522 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	20,896,086 - 20,897,012 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,044,704 - 1,045,630 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	19,108,400 - 19,109,325 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

OR4N5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	590,601 - 592,858 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	591,511 - 592,437 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	636,337 - 637,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	688,094 - 689,020 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	688,094 - 689,020 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	637,125 - 638,051 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	733,102 - 734,028 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	866,065 - 866,991 (-)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in LOC100152712
83 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021100061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021100061 ⟹ XP_020955720

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	79,379,088 - 79,380,023 (-)	NCBI

Sequence:

show sequence

ATGGAGAGGGAGAATAGCACAGTAGTAACCGAATTCATCCTCCTTGGTCTGACTCAGTCTCAAG
GTACTCAACTACTGGTCTTCACTCTAGTCTTAATTTTCTACTTCATTATCCTTCCTGGAAACTT
CCTCATCATCCTCACCATCAGGTCAGACCCTGGCCTCCCAGCTCCACTCTACTTCTTTCTGGGC
AACTTGGCCTTCCTGGATGCATCCTACTTCTTCATTGTGGCTCCCAGGATGCTGGTGGACTTCC
TCTCTGAGAAGAAGGTGATCTCCTACAGAGGCTGCATCACTCAGCTCTTTTTCTTGCATTTCCT
TGGAGCGGGGGAGATGTTCCTTCTTGTTGTGATGGCCTTTGACCGCTACATTGCCATCTGTCGT
CCTTTACATTACTCAACTGTCATGAACCCCAGGGCCTGCTATGCCTTGCTCGTGGCTCTGTGGC
TTGGAGGCTTTACTCATTCCATTGTACAAGTGGCTCTTATTCTTTACCTGCCCTTCTGTGGCCA
AAACCAGCTGGACAACTTCTTCTGTGATGTGCCGCAGGTCATCAAGCTGGCCTGCACCGACACC
TTTGTGGTGGAGTTCCTGATGGTTTCCAACAATGGCCTGCTAAGCCTCCTTTGCTTTCTAGGGC
TTCTGGCCTCCTATGCAGTCATCCTCTGCCATGTAAAGGGACACTCCTCTGAAGGGAAGAACAA
GGCTCTTTCCGCATGCACCACACACATTATCATTGTGTTTCTCATGTTTGGACCTGCCATTTTC
ATCTACACTCACCCTTTCAGAGCCGTTCCAGCTGACAAAGTGGTTTCCCTTTTTCACACTGTAA
TCTTTCCTCTGATGAATCCTGTAATTTATACTCTTCACAACCAGGAAGTAAAAGCTTCCATGAG
GAGATTATTGAGTCAGCATATGGTTTGCTGGATGCAATAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_020955720	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000056372.2
	ENSSSCP00005017216.1
	ENSSSCP00025003079.1
	ENSSSCP00035030408.1
	ENSSSCP00045001352.1
	ENSSSCP00050016875.1
	ENSSSCP00055030594.1
	ENSSSCP00070024906.1

RefSeq Acc Id:

XP_020955720 ⟸ XM_021100061

- UniProtKB:

A0A4X1UAH8 (UniProtKB/TrEMBL), A0A8D1GJ56 (UniProtKB/TrEMBL), A0A8D1M3H3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERENSTVVTEFILLGLTQSQGTQLLVFTLVLIFYFIILPGNFLIILTIRSDPGLPAPLYFFLG
NLAFLDASYFFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGAGEMFLLVVMAFDRYIAICR
PLHYSTVMNPRACYALLVALWLGGFTHSIVQVALILYLPFCGQNQLDNFFCDVPQVIKLACTDT
FVVEFLMVSNNGLLSLLCFLGLLASYAVILCHVKGHSSEGKNKALSACTTHIIIVFLMFGPAIF
IYTHPFRAVPADKVVSLFHTVIFPLMNPVIYTLHNQEVKASMRRLLSQHMVCWMQ

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000050695	UniProtKB/TrEMBL
	ENSSSCG00005017858	UniProtKB/TrEMBL
	ENSSSCG00025005679	UniProtKB/TrEMBL
	ENSSSCG00035056078	UniProtKB/TrEMBL
	ENSSSCG00045001335	UniProtKB/TrEMBL
	ENSSSCG00050030398	UniProtKB/TrEMBL
	ENSSSCG00055019679	UniProtKB/TrEMBL
	ENSSSCG00070015192	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000024469.3	UniProtKB/TrEMBL
	ENSSSCT00005028193.1	UniProtKB/TrEMBL
	ENSSSCT00025007594.1	UniProtKB/TrEMBL
	ENSSSCT00035074849.1	UniProtKB/TrEMBL
	ENSSSCT00045002110.1	UniProtKB/TrEMBL
	ENSSSCT00050040858.1	UniProtKB/TrEMBL
	ENSSSCT00055038504.1	UniProtKB/TrEMBL
	ENSSSCT00070029862.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100152712	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 4N5	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A287BJW6_PIG	UniProtKB/TrEMBL
	A0A4X1UAH8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0LKN3_PIG	UniProtKB/TrEMBL
	A0A8D1ACY3_PIG	UniProtKB/TrEMBL
	A0A8D1GJ56	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1M3H3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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