XXYLT1 (xyloside xylosyltransferase 1) - Rat Genome Database

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Gene: XXYLT1 (xyloside xylosyltransferase 1) Sus scrofa
Analyze
Symbol: XXYLT1
Name: xyloside xylosyltransferase 1
RGD ID: 14061593
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); magnesium ion binding (inferred); manganese ion binding (inferred); INVOLVED IN O-glycan processing (inferred); ASSOCIATED WITH atrial fibrillation (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,066,884 - 132,269,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,066,896 - 132,269,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
XXYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,066,884 - 132,269,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,066,896 - 132,269,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
XXYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,068,284 - 195,271,159 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3195,068,284 - 195,271,159 (-)EnsemblGRCh38hg38GRCh38
GRCh373194,789,013 - 194,991,888 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,270,302 - 196,473,166 (-)NCBINCBI36Build 36hg18NCBI36
Build 343196,270,311 - 196,473,174NCBI
Celera3193,204,274 - 193,400,324 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3192,167,474 - 192,367,382 (-)NCBIHuRef
CHM1_13194,751,978 - 194,954,756 (-)NCBICHM1_1
T2T-CHM13v2.03197,765,933 - 197,969,040 (-)NCBIT2T-CHM13v2.0
Xxylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,774,165 - 30,900,250 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,773,962 - 30,900,250 (-)EnsemblGRCm39 Ensembl
GRCm381630,955,347 - 31,081,432 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,955,144 - 31,081,432 (-)EnsemblGRCm38mm10GRCm38
MGSCv371630,955,589 - 31,081,518 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361630,875,377 - 31,001,127 (-)NCBIMGSCv36mm8
Celera1631,469,476 - 31,560,454 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
Xxylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,163,432 - 83,295,879 (+)NCBIGRCr8
mRatBN7.21169,658,481 - 69,790,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,658,460 - 69,790,730 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01173,198,404 - 73,330,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,198,522 - 73,329,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,271,067 - 76,403,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41171,532,958 - 71,660,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11171,590,399 - 71,716,292 (+)NCBI
Celera11464,572 - 596,800 (-)NCBICelera
Cytogenetic Map11q22NCBI
Xxylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,781,391 - 13,922,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,781,391 - 13,921,711 (+)NCBIChiLan1.0ChiLan1.0
XXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22193,001,382 - 193,203,532 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13193,001,923 - 193,205,747 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03192,374,972 - 192,574,398 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13202,675,557 - 202,873,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3202,675,557 - 202,873,399 (-)Ensemblpanpan1.1panPan2
XXYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13330,724,246 - 30,856,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3330,744,284 - 31,006,697 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3330,752,014 - 30,884,286 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03330,978,854 - 31,111,900 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3330,978,374 - 31,111,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13330,772,923 - 30,906,768 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03330,809,237 - 30,941,298 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,432,376 - 31,567,007 (+)NCBIUU_Cfam_GSD_1.0
Xxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602143,894,295 - 143,894,948 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493683341,138 - 43,489 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XXYLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,141,716 - 89,337,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1589,143,181 - 89,335,755 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604162,871,873 - 63,068,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xxylt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473062,774,092 - 62,915,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473062,773,629 - 62,915,131 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in XXYLT1
6059 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000042100   ⟹   ENSSSCP00000032526
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13132,066,884 - 132,269,965 (-)Ensembl
RefSeq Acc Id: XM_021070076   ⟹   XP_020925735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113132,066,896 - 132,269,986 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020925735   ⟸   XM_021070076
- UniProtKB: A0A286ZM39 (UniProtKB/TrEMBL),   A0A4X1U5S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032526   ⟸   ENSSSCT00000042100


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025044784 UniProtKB/TrEMBL
  ENSSSCG00030045684 UniProtKB/TrEMBL
  ENSSSCG00035042563 UniProtKB/TrEMBL
  ENSSSCG00040044376 UniProtKB/TrEMBL
  ENSSSCG00045004769 UniProtKB/TrEMBL
  ENSSSCG00050052787 UniProtKB/TrEMBL
  ENSSSCG00055014037 UniProtKB/TrEMBL
  ENSSSCG00060045940 UniProtKB/TrEMBL
  ENSSSCG00065006228 UniProtKB/TrEMBL
  ENSSSCG00070014223 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042100 ENTREZGENE
  ENSSSCT00000042100.2 UniProtKB/TrEMBL
  ENSSSCT00025060817.1 UniProtKB/TrEMBL
  ENSSSCT00030063773.1 UniProtKB/TrEMBL
  ENSSSCT00035056583.1 UniProtKB/TrEMBL
  ENSSSCT00040059519.1 UniProtKB/TrEMBL
  ENSSSCT00045007861.1 UniProtKB/TrEMBL
  ENSSSCT00050071879.1 UniProtKB/TrEMBL
  ENSSSCT00055027722.1 UniProtKB/TrEMBL
  ENSSSCT00060062319.1 UniProtKB/TrEMBL
  ENSSSCT00065008387.1 UniProtKB/TrEMBL
  ENSSSCT00070027876.1 UniProtKB/TrEMBL
InterPro Glyco_trans_8 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  XXLT1 UniProtKB/TrEMBL
NCBI Gene XXYLT1 ENTREZGENE
PANTHER PTHR46612 UniProtKB/TrEMBL
  XYLOSIDE XYLOSYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A286ZM39 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U5S8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95013 ENTREZGENE