APOC4 (apolipoprotein C4) - Rat Genome Database

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Gene: APOC4 (apolipoprotein C4) Sus scrofa
Analyze
Symbol: APOC4
Name: apolipoprotein C4
RGD ID: 14060980
Description: INVOLVED IN positive regulation of sequestering of triglyceride (inferred); triglyceride homeostasis (inferred); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN extracellular region (inferred); high-density lipoprotein particle (inferred); very-low-density lipoprotein particle (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: apolipoprotein C-IV
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,400,931 - 51,405,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,400,909 - 51,403,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,282,628 - 47,285,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
APOC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,400,931 - 51,405,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,400,909 - 51,403,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,282,628 - 47,285,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,942,237 - 44,945,496 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,942,237 - 44,945,496 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,445,494 - 45,448,753 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,137,335 - 50,140,591 (+)NCBINCBI36Build 36hg18NCBI36
Build 341950,137,334 - 50,140,591NCBI
Celera1942,249,817 - 42,253,073 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,875,522 - 41,879,312 (+)NCBIHuRef
CHM1_11945,448,327 - 45,451,585 (+)NCBICHM1_1
T2T-CHM13v2.01947,767,061 - 47,770,320 (+)NCBIT2T-CHM13v2.0
Apoc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,412,009 - 19,415,385 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,412,008 - 19,415,404 (-)EnsemblGRCm39 Ensembl
GRCm38719,678,084 - 19,681,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,678,083 - 19,681,479 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,263,443 - 20,266,765 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,836,616 - 18,839,938 (-)NCBIMGSCv36mm8
Celera717,084,177 - 17,087,500 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Apoc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,463,713 - 88,467,909 (-)NCBIGRCr8
mRatBN7.2179,335,745 - 79,339,942 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,335,745 - 79,339,981 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,730,675 - 84,734,858 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,282,007 - 93,286,194 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,485,781 - 86,489,964 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,595,339 - 80,599,525 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,595,326 - 80,599,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,860,928 - 81,865,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,985,350 - 78,989,564 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,063,617 - 79,067,655 (+)NCBI
Celera173,795,049 - 73,799,140 (-)NCBICelera
Cytogenetic Map1q21NCBI
Apoc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555552,018,327 - 2,018,828 (+)NCBIChiLan1.0ChiLan1.0
APOC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,100,510 - 51,104,382 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,972,255 - 52,975,933 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,889,099 - 41,892,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,495,239 - 50,498,194 (+)NCBIpanpan1.1PanPan1.1panPan2
APOC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,507,449 - 110,509,684 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,507,489 - 110,509,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,988,530 - 109,990,622 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,037,222 - 111,039,314 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,037,262 - 111,039,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,711,990 - 110,714,082 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,347,409 - 110,349,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,216,278 - 111,218,371 (-)NCBIUU_Cfam_GSD_1.0
Apoc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,180,724 - 17,182,728 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,528,187 - 1,530,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,391,454 - 38,406,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,398,471 - 38,406,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,967,308 - 17,987,177 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in APOC4
47 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000051607   ⟹   ENSSSCP00000033486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl651,400,931 - 51,405,169 (+)Ensembl
RefSeq Acc Id: NM_001174132   ⟹   NP_001167603
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1651,400,909 - 51,403,719 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001167603   ⟸   NM_001174132
- Peptide Label: precursor
- UniProtKB: D3Y266 (UniProtKB/TrEMBL),   A0A4X1VWX4 (UniProtKB/TrEMBL),   A0A286ZPG0 (UniProtKB/TrEMBL),   A0A287AWK0 (UniProtKB/TrEMBL),   A0A8D0W6Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000033486   ⟸   ENSSSCT00000051607


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025042214 UniProtKB/TrEMBL
  ENSSSCG00030026273 UniProtKB/TrEMBL
  ENSSSCG00035071655 UniProtKB/TrEMBL
  ENSSSCG00040038129 UniProtKB/TrEMBL
  ENSSSCG00045029835 UniProtKB/TrEMBL
  ENSSSCG00050032200 UniProtKB/TrEMBL
  ENSSSCG00055005906 UniProtKB/TrEMBL
  ENSSSCG00060023460 UniProtKB/TrEMBL
  ENSSSCG00065000533 UniProtKB/TrEMBL
  ENSSSCG00070028325 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051607 ENTREZGENE
  ENSSSCT00000051607.3 UniProtKB/TrEMBL
  ENSSSCT00025057202.1 UniProtKB/TrEMBL
  ENSSSCT00030036703.1 UniProtKB/TrEMBL
  ENSSSCT00035096911.1 UniProtKB/TrEMBL
  ENSSSCT00040051007.1 UniProtKB/TrEMBL
  ENSSSCT00045050892.1 UniProtKB/TrEMBL
  ENSSSCT00050043243.1 UniProtKB/TrEMBL
  ENSSSCT00055011507.1 UniProtKB/TrEMBL
  ENSSSCT00060031816.1 UniProtKB/TrEMBL
  ENSSSCT00065000609.1 UniProtKB/TrEMBL
  ENSSSCT00070056811.1 UniProtKB/TrEMBL
  ENSSSCT00070056812.1 UniProtKB/TrEMBL
InterPro APOC4 UniProtKB/TrEMBL
KEGG Report ssc:100381253 UniProtKB/TrEMBL
NCBI Gene APOC4 ENTREZGENE
PANTHER APOLIPOPROTEIN C-IV UniProtKB/TrEMBL
  PTHR32288 UniProtKB/TrEMBL
Pfam APOC4 UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A286ZPG0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AWK0 ENTREZGENE
  A0A4X1VWX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W1F5_PIG UniProtKB/TrEMBL
  A0A8D0W6Q4 ENTREZGENE, UniProtKB/TrEMBL
  D3Y266 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AWK0 UniProtKB/TrEMBL