LOC100622127 (olfactory receptor 5H2-like) - Rat Genome Database

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Pathways
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Gene: LOC100622127 (olfactory receptor 5H2-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100622127
Name: olfactory receptor 5H2-like
RGD ID: 14059197
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); odorant binding (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113161,085,302 - 161,086,237 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213171,953,422 - 171,954,357 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100622127
26 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005654075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005654075   ⟹   XP_005654132
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113161,085,302 - 161,086,237 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005654132   ⟸   XM_005654075
- UniProtKB: A0A8D0ZJM3 (UniProtKB/TrEMBL),   A0A5G2QHE1 (UniProtKB/TrEMBL),   A0A8D0IUS5 (UniProtKB/TrEMBL),   A0A8D1J3M6 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000041140 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005015078 UniProtKB/TrEMBL
  ENSSSCG00025031595 UniProtKB/TrEMBL
  ENSSSCG00035033616 UniProtKB/TrEMBL
  ENSSSCG00045035404 UniProtKB/TrEMBL
  ENSSSCG00055000150 UniProtKB/TrEMBL
  ENSSSCG00055016133 UniProtKB/TrEMBL
  ENSSSCG00065031548 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000077297 ENTREZGENE
  ENSSSCT00000077297.1 UniProtKB/TrEMBL
  ENSSSCT00005023534.1 UniProtKB/TrEMBL
  ENSSSCT00025042944.1 UniProtKB/TrEMBL
  ENSSSCT00035044540.1 UniProtKB/TrEMBL
  ENSSSCT00045060784.1 UniProtKB/TrEMBL
  ENSSSCT00055000279.1 UniProtKB/TrEMBL
  ENSSSCT00055031778.1 UniProtKB/TrEMBL
  ENSSSCT00065042700.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100622127 UniProtKB/TrEMBL
NCBI Gene LOC100622127 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A5G2QHE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IUS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZJM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J3M6 ENTREZGENE, UniProtKB/TrEMBL