SLC25A4 (solute carrier family 25 member 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC25A4 (solute carrier family 25 member 4) Sus scrofa
Analyze
Symbol: SLC25A4
Name: solute carrier family 25 member 4
RGD ID: 14059161
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN aging (ortholog); apoptotic mitochondrial changes (ortholog); heart development (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); Alzheimer's disease (ortholog); autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 2 (ortholog); FOUND IN membrane raft (ortholog); mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenine nucleotide translocator 1; ADP/ATP translocase 1; ANT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1546,193,746 - 46,200,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11546,193,498 - 46,197,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21552,922,472 - 52,926,762 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
SLC25A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1546,193,746 - 46,200,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11546,193,498 - 46,197,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21552,922,472 - 52,926,762 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384185,143,266 - 185,150,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4185,143,266 - 185,150,382 (+)EnsemblGRCh38hg38GRCh38
GRCh374186,064,420 - 186,071,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364186,301,392 - 186,305,419 (+)NCBINCBI36Build 36hg18NCBI36
Build 344186,439,546 - 186,443,573NCBI
Celera4183,391,334 - 183,398,454 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4181,818,234 - 181,825,547 (+)NCBIHuRef
CHM1_14186,040,918 - 186,048,039 (+)NCBICHM1_1
T2T-CHM13v2.04188,486,951 - 188,494,056 (+)NCBIT2T-CHM13v2.0
Slc25a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,660,205 - 46,664,099 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl846,659,834 - 46,664,321 (-)EnsemblGRCm39 Ensembl
GRCm38846,207,168 - 46,211,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl846,206,797 - 46,211,284 (-)EnsemblGRCm38mm10GRCm38
MGSCv37847,292,693 - 47,296,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36847,705,502 - 47,710,101 (-)NCBIMGSCv36mm8
MGSCv36845,369,594 - 45,374,194 (-)NCBIMGSCv36mm8
Celera848,888,832 - 48,892,502 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.22NCBI
Slc25a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21646,072,935 - 46,076,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,072,939 - 46,076,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1651,474,917 - 51,478,712 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01654,843,795 - 54,847,590 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01650,114,293 - 50,118,088 (+)NCBIRnor_WKY
Rnor_6.01649,266,903 - 49,270,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1649,266,903 - 49,270,698 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01648,981,600 - 48,985,395 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41649,353,476 - 49,357,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11649,353,550 - 49,357,346 (+)NCBI
Celera1644,072,219 - 44,076,014 (+)NCBICelera
Cytogenetic Map16q11NCBI
Slc25a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540323,878,329 - 23,882,322 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540323,878,329 - 23,882,322 (-)NCBIChiLan1.0ChiLan1.0
SLC25A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14189,531,914 - 189,534,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,531,914 - 189,534,549 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04177,310,982 - 177,315,016 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC25A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,454,660 - 45,458,606 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,411,810 - 45,542,162 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1645,942,189 - 45,946,135 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01647,671,404 - 47,675,349 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1647,671,405 - 47,675,335 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11645,638,494 - 45,642,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01646,251,541 - 46,255,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01646,383,474 - 46,387,417 (-)NCBIUU_Cfam_GSD_1.0
Slc25a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494333,974,957 - 33,979,529 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365544,130,461 - 4,135,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17131,102,077 - 131,106,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037111,362,070 - 111,369,325 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476915,989,547 - 15,997,680 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476915,989,527 - 15,993,609 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 3 2 2 23 2 1
Low 8 2 3 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017193   ⟹   ENSSSCP00000016732
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1546,193,746 - 46,200,987 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000024370   ⟹   ENSSSCP00000022128
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1546,193,750 - 46,199,482 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059379   ⟹   ENSSSCP00000031255
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1546,193,746 - 46,200,987 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106519   ⟹   ENSSSCP00000079710
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1546,195,153 - 46,200,987 (+)Ensembl
RefSeq Acc Id: XM_003133345   ⟹   XP_003133393
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11546,193,498 - 46,197,989 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003133393 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD20940 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003133393   ⟸   XM_003133345
- UniProtKB: A0A286ZIE8 (UniProtKB/TrEMBL),   A0A4X1VRN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000031255   ⟸   ENSSSCT00000059379
RefSeq Acc Id: ENSSSCP00000016732   ⟸   ENSSSCT00000017193
RefSeq Acc Id: ENSSSCP00000022128   ⟸   ENSSSCT00000024370
RefSeq Acc Id: ENSSSCP00000079710   ⟸   ENSSSCT00000106519


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015790 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033044 UniProtKB/TrEMBL
  ENSSSCG00015019015 UniProtKB/TrEMBL
  ENSSSCG00025033568 UniProtKB/TrEMBL
  ENSSSCG00030074367 UniProtKB/TrEMBL
  ENSSSCG00035017426 UniProtKB/TrEMBL
  ENSSSCG00040032535 UniProtKB/TrEMBL
  ENSSSCG00045007135 UniProtKB/TrEMBL
  ENSSSCG00050023769 UniProtKB/TrEMBL
  ENSSSCG00055001895 UniProtKB/TrEMBL
  ENSSSCG00060055816 UniProtKB/TrEMBL
  ENSSSCG00065002932 UniProtKB/TrEMBL
  ENSSSCG00070027198 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016732.3 UniProtKB/TrEMBL
  ENSSSCP00000022128.2 UniProtKB/TrEMBL
  ENSSSCP00000031255 ENTREZGENE
  ENSSSCP00000031255.1 UniProtKB/TrEMBL
  ENSSSCP00005032968.1 UniProtKB/TrEMBL
  ENSSSCP00015009862.1 UniProtKB/TrEMBL
  ENSSSCP00015009960.1 UniProtKB/TrEMBL
  ENSSSCP00025019511.1 UniProtKB/TrEMBL
  ENSSSCP00025019537.1 UniProtKB/TrEMBL
  ENSSSCP00030048381.1 UniProtKB/TrEMBL
  ENSSSCP00030048397.1 UniProtKB/TrEMBL
  ENSSSCP00035008217.1 UniProtKB/TrEMBL
  ENSSSCP00035008240.1 UniProtKB/TrEMBL
  ENSSSCP00040018470.1 UniProtKB/TrEMBL
  ENSSSCP00040018491.1 UniProtKB/TrEMBL
  ENSSSCP00045008037.1 UniProtKB/TrEMBL
  ENSSSCP00045008093.1 UniProtKB/TrEMBL
  ENSSSCP00050013395.1 UniProtKB/TrEMBL
  ENSSSCP00050013398.1 UniProtKB/TrEMBL
  ENSSSCP00055002664.1 UniProtKB/TrEMBL
  ENSSSCP00055002682.1 UniProtKB/TrEMBL
  ENSSSCP00060032879.1 UniProtKB/TrEMBL
  ENSSSCP00060032900.1 UniProtKB/TrEMBL
  ENSSSCP00065001440.1 UniProtKB/TrEMBL
  ENSSSCP00065001455.1 UniProtKB/TrEMBL
  ENSSSCP00070046264.1 UniProtKB/TrEMBL
  ENSSSCP00070046265.1 UniProtKB/TrEMBL
  ENSSSCP00070046266.1 UniProtKB/TrEMBL
  ENSSSCP00070046267.1 UniProtKB/TrEMBL
  ENSSSCP00070046268.1 UniProtKB/TrEMBL
  ENSSSCP00070046269.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017193.4 UniProtKB/TrEMBL
  ENSSSCT00000024370.3 UniProtKB/TrEMBL
  ENSSSCT00000059379 ENTREZGENE
  ENSSSCT00000059379.2 UniProtKB/TrEMBL
  ENSSSCT00005053414.1 UniProtKB/TrEMBL
  ENSSSCT00015025280.1 UniProtKB/TrEMBL
  ENSSSCT00015025500.1 UniProtKB/TrEMBL
  ENSSSCT00025045734.1 UniProtKB/TrEMBL
  ENSSSCT00025045782.1 UniProtKB/TrEMBL
  ENSSSCT00030104351.1 UniProtKB/TrEMBL
  ENSSSCT00030104378.1 UniProtKB/TrEMBL
  ENSSSCT00035022390.1 UniProtKB/TrEMBL
  ENSSSCT00035022442.1 UniProtKB/TrEMBL
  ENSSSCT00040043972.1 UniProtKB/TrEMBL
  ENSSSCT00040044011.1 UniProtKB/TrEMBL
  ENSSSCT00045011830.1 UniProtKB/TrEMBL
  ENSSSCT00045011906.1 UniProtKB/TrEMBL
  ENSSSCT00050032079.1 UniProtKB/TrEMBL
  ENSSSCT00050032092.1 UniProtKB/TrEMBL
  ENSSSCT00055003514.1 UniProtKB/TrEMBL
  ENSSSCT00055003532.1 UniProtKB/TrEMBL
  ENSSSCT00060076060.1 UniProtKB/TrEMBL
  ENSSSCT00060076096.1 UniProtKB/TrEMBL
  ENSSSCT00065003804.1 UniProtKB/TrEMBL
  ENSSSCT00065003831.1 UniProtKB/TrEMBL
  ENSSSCT00070054540.1 UniProtKB/TrEMBL
  ENSSSCT00070054541.1 UniProtKB/TrEMBL
  ENSSSCT00070054542.1 UniProtKB/TrEMBL
  ENSSSCT00070054543.1 UniProtKB/TrEMBL
  ENSSSCT00070054544.1 UniProtKB/TrEMBL
  ENSSSCT00070054545.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Aden_trnslctor UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100517196 UniProtKB/TrEMBL
NCBI Gene SLC25A4 ENTREZGENE
PANTHER PTHR45635 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS ADPTRNSLCASE UniProtKB/TrEMBL
  MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A286ZIE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VRN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VW40_PIG UniProtKB/TrEMBL
  A0A4X1VWJ0_PIG UniProtKB/TrEMBL
  A0A4X1VWJ5_PIG UniProtKB/TrEMBL
  A0A4X1VX99_PIG UniProtKB/TrEMBL
  A0A4X1VY80_PIG UniProtKB/TrEMBL
  F1RZQ6_PIG UniProtKB/TrEMBL
  I3LDJ6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95503 ENTREZGENE