ZNF10 (zinc finger protein 10) - Rat Genome Database

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Gene: ZNF10 (zinc finger protein 10) Sus scrofa
Analyze
Symbol: ZNF10
Name: zinc finger protein 10
RGD ID: 14059037
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,477,612 - 22,502,574 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,477,507 - 22,502,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,477,612 - 22,502,574 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,477,507 - 22,502,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812133,130,627 - 133,159,465 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12133,130,575 - 133,159,465 (+)EnsemblGRCh38hg38GRCh38
GRCh3712133,707,213 - 133,736,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612132,217,287 - 132,246,124 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412132,317,563 - 132,346,397NCBI
Celera12133,407,511 - 133,436,350 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12130,486,365 - 130,514,967 (+)NCBIHuRef
CHM1_112133,527,147 - 133,555,984 (+)NCBICHM1_1
T2T-CHM13v2.012133,187,943 - 133,216,780 (+)NCBIT2T-CHM13v2.0
Traj42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,413,230 - 54,413,293 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,413,230 - 54,413,293 (+)EnsemblGRCm39 Ensembl
GRCm381454,175,773 - 54,175,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,175,773 - 54,175,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,795,448 - 54,796,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.68NCBI
ZNF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210141,240,442 - 141,271,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112141,236,952 - 141,268,574 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,610,629 - 130,639,555 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112135,213,728 - 135,243,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12135,213,728 - 135,243,156 (+)Ensemblpanpan1.1panPan2
ZNF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12683,807 - 109,185 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2645,630 - 108,235 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26125,144 - 150,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026139,615 - 165,031 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26144,663 - 165,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12681,605 - 107,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026167,639 - 193,050 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02699,838 - 125,227 (-)NCBIUU_Cfam_GSD_1.0
Znf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118121,810,821 - 121,833,447 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366602,887,700 - 2,912,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,430,402 - 128,459,680 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037116,329,847 - 116,361,375 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474728,369,817 - 28,417,342 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474728,369,882 - 28,425,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF10
269 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000062736   ⟹   ENSSSCP00000054817
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,480,079 - 22,502,556 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065784   ⟹   ENSSSCP00000042690
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,477,612 - 22,502,574 (-)Ensembl
RefSeq Acc Id: XM_005658537   ⟹   XP_005658594
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,477,507 - 22,489,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072890   ⟹   XP_020928549
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,477,507 - 22,502,646 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020928549   ⟸   XM_021072890
- Peptide Label: isoform X2
- UniProtKB: A0A8D1XSC4 (UniProtKB/TrEMBL),   A0A480RL40 (UniProtKB/TrEMBL),   A0A8D1S7X4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005658594   ⟸   XM_005658537
- Peptide Label: isoform X1
- UniProtKB: A0A480JR49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000042690   ⟸   ENSSSCT00000065784
RefSeq Acc Id: ENSSSCP00000054817   ⟸   ENSSSCT00000062736
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033616 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036005 UniProtKB/TrEMBL
  ENSSSCG00025029839 UniProtKB/TrEMBL
  ENSSSCG00030035080 UniProtKB/TrEMBL
  ENSSSCG00035068085 UniProtKB/TrEMBL
  ENSSSCG00040061325 UniProtKB/TrEMBL
  ENSSSCG00045009802 UniProtKB/TrEMBL
  ENSSSCG00050008861 UniProtKB/TrEMBL
  ENSSSCG00055028067 UniProtKB/TrEMBL
  ENSSSCG00060059380 UniProtKB/TrEMBL
  ENSSSCG00065016979 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062736.3 UniProtKB/TrEMBL
  ENSSSCT00000065784 ENTREZGENE
  ENSSSCT00000065784.3 UniProtKB/TrEMBL
  ENSSSCT00005057478.1 UniProtKB/TrEMBL
  ENSSSCT00005057501.1 UniProtKB/TrEMBL
  ENSSSCT00005057572.1 UniProtKB/TrEMBL
  ENSSSCT00005057606.1 UniProtKB/TrEMBL
  ENSSSCT00025040579.1 UniProtKB/TrEMBL
  ENSSSCT00025040668.1 UniProtKB/TrEMBL
  ENSSSCT00025040725.1 UniProtKB/TrEMBL
  ENSSSCT00030048618.1 UniProtKB/TrEMBL
  ENSSSCT00030048633.1 UniProtKB/TrEMBL
  ENSSSCT00035091865.1 UniProtKB/TrEMBL
  ENSSSCT00035091874.1 UniProtKB/TrEMBL
  ENSSSCT00040083503.1 UniProtKB/TrEMBL
  ENSSSCT00040083606.1 UniProtKB/TrEMBL
  ENSSSCT00040083699.1 UniProtKB/TrEMBL
  ENSSSCT00045016591.1 UniProtKB/TrEMBL
  ENSSSCT00045016617.1 UniProtKB/TrEMBL
  ENSSSCT00045016661.1 UniProtKB/TrEMBL
  ENSSSCT00050011986.1 UniProtKB/TrEMBL
  ENSSSCT00050011999.1 UniProtKB/TrEMBL
  ENSSSCT00055055589.1 UniProtKB/TrEMBL
  ENSSSCT00055055635.1 UniProtKB/TrEMBL
  ENSSSCT00055055678.1 UniProtKB/TrEMBL
  ENSSSCT00060080991.1 UniProtKB/TrEMBL
  ENSSSCT00060081000.1 UniProtKB/TrEMBL
  ENSSSCT00060081005.1 UniProtKB/TrEMBL
  ENSSSCT00065022536.1 UniProtKB/TrEMBL
  ENSSSCT00065022545.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100627773 UniProtKB/TrEMBL
NCBI Gene ZNF10 ENTREZGENE
PANTHER FI01202P-RELATED UniProtKB/TrEMBL
  IP01015P-RELATED UniProtKB/TrEMBL
  IP01201P-RELATED UniProtKB/TrEMBL
  RUMBA ZINC FINGER PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 774 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287AFR9_PIG UniProtKB/TrEMBL
  A0A480JR49 ENTREZGENE, UniProtKB/TrEMBL
  A0A480RL40 ENTREZGENE
  A0A8D0LU29_PIG UniProtKB/TrEMBL
  A0A8D0UNJ6_PIG UniProtKB/TrEMBL
  A0A8D0WK47_PIG UniProtKB/TrEMBL
  A0A8D1C6R9_PIG UniProtKB/TrEMBL
  A0A8D1FHK7_PIG UniProtKB/TrEMBL
  A0A8D1H3A1_PIG UniProtKB/TrEMBL
  A0A8D1S381_PIG UniProtKB/TrEMBL
  A0A8D1S7X4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XSC4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BEQ5 UniProtKB/TrEMBL
  A0A480RL40 UniProtKB/TrEMBL
VGNC ID VGNC:111444 ENTREZGENE